RNA id: TU28690


Basic Information

Item Value
RNA id TU28690
length 3711
RNA type TUCP
GC content 0.44
exon number 8
gene id LOC122342134
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12092603 ~ 12100852 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGATGGCACAATTCTGCAGTTTTTCACTCATCGTCTTGATATAGATCTTATCATCCAGCCCCTTTTCTCCACCCTCTGCTCTCGATATATGGTCATCCTCTTCTTGGAACCCCTCCTCTGTCCCGCTGCTGTCTCTAAAGTTATTATGGCGTATGCCGCCgacctccctctctctctcacctccaGCCTAAAGTGCACGGCAGTGGTTGGTGGTATGGCTGCCAGCACTTGGCCCTGTCACTCATTTGCCCTAGGCCCCCGCCCCCATCTCATTTTACCCCCgagtttgtctgtctgtctgtctctgcacCATTAGTGAGGTCCGTGCTGCAGACACCGCCTTGCCAACCACACTGCTCTTCGTAGTCCTTAAGTGCTAACTCAACGCAGAGggaacattttttgtaaatttttcaaaaatctacAGAACACACCGGCTGGCGAAGGGATCCTTGTGTTCGTCTGTCATTGGGAACAAGCGTGCAAACTATTGGAATACTTTGGACCTCTTGACGTCACCTGTTCTACCTCGCCATAGCCTGGGTGCAGCCGAGTGTCTGTGTGATcgcgtgtgagtgtgtttgtgaacgTGTGTGGTTTAAGAGGATCTAGGTGGTGTCTACATTGGGTTTTGGTTTAACAGGTGCACGTGCAGGAGCGTTGCACTGTGGTTCCTCTGTTTGGATTTACTGCTCTGATCAGACATGGCTACTCTGAGAAGCTTGCTGCTAGGGCTCTTGTTGGCCCTGCTTTGCTCCTTCCAGACACCGCTGGCGCCCTCAGCCTCTGTCAAAGCCCAGGATCTGCCATTTGTCCGTGAGGAAGGCCTGAtggctgatgatgatgatgacgatgatgatgacgacgacgacgatgatgatgatgacgacgatgatgacgacgacgatgatgatgatgacgatgatgatgatgacgatgatgacgacgatgatgacgacgatgatgatgacgacgatgatgacgatgacgacgagatgatgatgatgatgatgatgatgatcatgaAGAGCTATGAGTTCTGTGGGCCCTCTGAAGGCGGACTGCTTCAAGTCCTGAtgtgcagtacagtacagtgCTTATGAACTGAGGACttaagagagaaaagagaaaaaacaaacccagCGCTGCAGTCTGAGCCCCAGGCCTCACTCTGGCCCAATAGATCAGATCGTTCTTTGATTTTTGTCTCGTTTTGAAAGAGCGGGTTCCACCCTTTCCTTCATCCCTATATTTGTCCTGTTTGAATTTGGAATCTTCTGCATTTGTGTCACCATGTGAAactacagagaaagaaagagagacaggcaGATGTAGCGGGGGAATATACCATGGAGAGAGATCACCGTGGATTAGTAGGGACCGAtagaaaaagagagcgagagagagagagagagagacaggaggatGTTGGATGGTTGTGGGGAGCATAGGAAGACAGACTGATTGGACAGATCGGTTCcagattctctctctttccctacATCTCCCcgatctcattctttctctgTAGAGATTCTCCACAACAGAAGTGACATGTACACCACCTTGATCTGTCTACTTGTAAAGTCATtgtgtgatatttaaatgatcTATATGGGTTTATAAAAGTTACATATGTTATCTCTATTTATGctaatatctatttatttcattatccTTACCAGAGAGGATTCTCATTTTCTAAATAGttgcaaaaaaaggaaaaaaaataccccTCTAAATGTACATTCTTCGATTCTTAAACATGTACTATTGCTGTAAcagtacattttagtttttctctttttcgtttaaaataaattagtaaaacgGACAACTGGAAACATACGGTGAGCAGTCAGGGTCAATATGTATGAAGTGTTTAAAGGACACACTAGGGATGCAGCAGCACAGATGTCAGCGGAGAGgtagcaaaagagagagaatgttcattcataatttacatattcatgTTGATACATACAGGAAGTATCAAAAGGGAACAGGCAATACAGCAACTATCAAGAGATGCAAAATATAACTGTTTAGACTGAATCCTTTTTCTGttgtaactgtattttttttttaagtttcttctttttcctggtgtttgttttttcattctcTGTTTTGTGTAATATCTGCTGTGTCATCATTCTAAGTAGCAGAATGGTGTGTTGTACAAAGCACCACATCTCTTAACCCCACTCTGAAACGAATAAATCAAAAGATCCTGTGTTGCACAGTGTAATTTCTGTTATCTCTGTTATTTTACCTTTAAATGTGTCtcagaatgtctttttttatctaGATAGCATACTGTACATGTAATCAGTAGAGAGAACTTATTAATTGTAGCACAAAAAGTGTACTGTATTAACAAAGAAacctaaatgcatttttaaaagaacattgtCATTTTGTGAtgatattaacatatttataaatctttatttattttatttattattattttgtgaaaatatataataagtgTACACTTTTATATACATGGTAGTtgtacttttttgtgtttgtgtgttatatatacatacactagtcaacattttaaatagatcAAAAACTTTCATGAAAGTTGCCCTTAAACCTACaaccaaaatgcattcttgtcttaggacaactttgataaactattttgatccatttcaaatgttgactataTATAGTTGCTCACAAACATGTGGTGAgttgtgtatgtgcatgtgtgtgtgaaagtgagaaagagaagTGGTGTTCAACGTGAGTAAGACTAATTCATTCCGTTTCGCATCACAATTCTcaccacacttttttttacatacacatatcaatgataataaaaaaagctgacaACATATCTTTcagatgatgacgatgatgatgattatcATGAAGGATCTATTTGTTCACTGTGTGCCCACTGTGAGCACTGCGACAGCTGTGATAAGTGCCCATGCAAAAAGAAAGATGACTCTGCGCACTGTGACTTCTGTGATGACTGTGGAAAGTGCTACATGTGTCCTGTTTGTGAGGCCGTCTGCAAGCCAGgtgGCTTTGTCGACTCTGTTTCTGGATCCATCTATAAGACTGTCGCAGACGTCTTtaatgatgatgacgatgacgacgacgacgacgatgacAACTAAACCCATTCATCACCAGCATGTGGCCAAAAGAGGAACGTGCAATTGGGCGTTGCGTTTCACAGATTTCAGGATTTACATTGTAGCGTTATGTTCATTgtcattaagttattttttctctttttaatgttATCACATCACACGCTACAGTCTGgtcaataaatacatatacgtGGAACTTAACTAATTTCATTAGGCTaccttaaattaaatgtatttaattgaacAACATTTCCCTTTTAAACAGTCTTGTGATTAACAAAAGTTATGATATGAAATGTAATTGCAAACCTAACTGTGTTGTTTTGAGACTACTTATGGAATAAAATGAGggaacgttttatttatttgtttaagtaataatactttaaaaccTACATCAGTGTTGACAGAGTATAATTGTCTGTGAGGGATGTCCTTACTGTCTCTGTTAAATAGGTTGTAATGTTTTTCACTTTGCTGTCAATTTTTCCGCTGACGAAACATGATTTCCAAACATGATTTGTGATATTAAATATGGCCTTAAAGGGATGttaatccaaaaaacaaaactaaaataaagcaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28687 lncRNA upstream 18100 12074231 ~ 12074503 (+) True G19257
TU28685 lncRNA upstream 19530 12072719 ~ 12073073 (+) True G19255
TU28679 lncRNA upstream 43181 12042884 ~ 12049422 (+) False prr12b
TU28622 lncRNA upstream 118597 11967648 ~ 11974006 (+) True G19208
TU28625 lncRNA upstream 198947 11891903 ~ 11893656 (+) False syt5a
TU28697 lncRNA downstream 16491 12117343 ~ 12117909 (+) False pax10
TU28698 lncRNA downstream 17686 12118538 ~ 12118775 (+) True G19263
TU28710 lncRNA downstream 31777 12132629 ~ 12134957 (+) True G19274
TU28736 lncRNA downstream 127083 12227935 ~ 12228520 (+) True G19287
TU28700 lncRNA downstream 145356 12246208 ~ 12249997 (+) False LOC122341822
XM_043230519.1 mRNA upstream 2398 12075141 ~ 12090205 (+) True trpm4a
XM_043230529.1 mRNA upstream 2398 12075194 ~ 12090205 (+) False trpm4a
XM_043230508.1 mRNA upstream 20453 12062091 ~ 12072150 (+) True scaf1
XM_043230500.1 mRNA upstream 20453 12062091 ~ 12072150 (+) False scaf1
XM_043230491.1 mRNA upstream 20453 12062091 ~ 12072150 (+) False scaf1
XM_043235680.1 mRNA downstream 13196 12114048 ~ 12117939 (+) True pax10
XM_043233744.1 mRNA downstream 19822 12120674 ~ 12127106 (+) True bcl2l12
XM_043233743.1 mRNA downstream 19822 12120674 ~ 12127106 (+) False bcl2l12
XM_043235777.1 mRNA downstream 40449 12141301 ~ 12143887 (+) True unc119.2
XM_043235657.1 mRNA downstream 44259 12145111 ~ 12149131 (+) True mmp25a
XR_006249731.1 other upstream 258679 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 258679 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 258679 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 722851 11368893 ~ 11369752 (+) True G18949
TU28257 other upstream 756778 11333759 ~ 11335825 (+) True LOC122331261
XR_006249244.1 other downstream 202512 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 411074 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 411074 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 418985 12519837 ~ 12528803 (+) False gtpbp1
TU29192 other downstream 734529 12835381 ~ 12987913 (+) True LOC122332158

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050243 False 3445 mRNA 0.42 6 NC_007114.7 32526263 ~ 32531004 (+)
eurasian perch (Perca fluviatilis) TU240674 True 214 lncRNA 0.37 1 NC_053128.1 25969456 ~ 25969669 (-)
striped catfish (Pangasianodon hypophthalmus) TU240674 False 2834 lncRNA 0.44 4 NC_047607.1 486309 ~ 489731 (-)