RNA id: TU28698


Basic Information

Item Value
RNA id TU28698
length 238
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G19263
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12118538 ~ 12118775 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACAATCATAACGCGTTGTTGCAAAAGGCTGCAAAGACAATCAAAACATACTGACCATGTGTAATATACTGAAGTTAATGATTTATTACTGTACATTGTTAAATGGACATTACTGTGATTTGATTACTGCTTTATTTCACCACTCTGTAACATTCATAGGTTTTTTTCCTGTCGGATCCCATGAACTCACTGTAGATTTGtatgtttgaatgtgtgtgaatATGAACGAGAGAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28697 lncRNA upstream 629 12117343 ~ 12117909 (+) False pax10
TU28687 lncRNA upstream 44035 12074231 ~ 12074503 (+) True G19257
TU28685 lncRNA upstream 45465 12072719 ~ 12073073 (+) True G19255
TU28679 lncRNA upstream 69116 12042884 ~ 12049422 (+) False prr12b
TU28622 lncRNA upstream 144532 11967648 ~ 11974006 (+) True G19208
TU28710 lncRNA downstream 13854 12132629 ~ 12134957 (+) True G19274
TU28736 lncRNA downstream 109160 12227935 ~ 12228520 (+) True G19287
TU28700 lncRNA downstream 127433 12246208 ~ 12249997 (+) False LOC122341822
TU28784 lncRNA downstream 393151 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA downstream 393151 12511926 ~ 12513721 (+) False G19326
XM_043235680.1 mRNA upstream 599 12114048 ~ 12117939 (+) True pax10
XM_043235899.1 mRNA upstream 15606 12098906 ~ 12102932 (+) True LOC122342107
XM_043235932.1 mRNA upstream 20333 12092898 ~ 12098205 (+) False LOC122342134
XM_043230519.1 mRNA upstream 28333 12075141 ~ 12090205 (+) True trpm4a
XM_043230529.1 mRNA upstream 28333 12075194 ~ 12090205 (+) False trpm4a
XM_043233744.1 mRNA downstream 1899 12120674 ~ 12127106 (+) True bcl2l12
XM_043233743.1 mRNA downstream 1899 12120674 ~ 12127106 (+) False bcl2l12
XM_043235777.1 mRNA downstream 22526 12141301 ~ 12143887 (+) True unc119.2
XM_043235657.1 mRNA downstream 26336 12145111 ~ 12149131 (+) True mmp25a
XM_043234868.1 mRNA downstream 31022 12149797 ~ 12158601 (+) True srrm2
TU28690 other upstream 17686 12092603 ~ 12100852 (+) True LOC122342134
XR_006249731.1 other upstream 284614 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 284614 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 284614 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 748786 11368893 ~ 11369752 (+) True G18949
XR_006249244.1 other downstream 184589 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 393151 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 393151 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 401062 12519837 ~ 12528803 (+) False gtpbp1
TU29192 other downstream 716606 12835381 ~ 12987913 (+) True LOC122332158

Expression Profile