RNA id: XM_043234868.1


Basic Information

Item Value
RNA id XM_043234868.1
length 4526
RNA type mRNA
GC content 0.49
exon number 15
gene id srrm2
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12149797 ~ 12158601 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGCGAGGTCTTCTCGATGACGTCCCAATGAGCGTTACCTGTTCATTCTAGCCAGCGTTGCGTACgtcgtttttattttacaaggaTTATTCGCTATAGAATTGGTGGGTTTTAGCTTGTTGTGCCACAGTTGTTCGGTCTTTGGCCTGTAACGGTTCCACTTTTGTTCTCTCCCTGAGCGGGATCAGAGAGCAGAGATGTATAACGGTATTGGGTTGACCACGCCACGAGGCAGTGGCACGAACGGCTACGTTCAGCGTAACCTGTCCAGCATACGTGTGAAGAGGAACAGGGACGAGCGTGGAGGAGAGCGGgatgagaaagacagagagagactggaGAGCCAGCTGAACAGACAGCCTAACGCTGATATCCTAGAGCACCAAAGAAAGAGACAGCTGGAGGTGAAATGTGCCGAGCTGCAGGACATGATGGAGGAGCAGGgGTACTCTGCAGAGGAGATTGAAGAAAAGGTCAACACTTTCCGTTTGATGCTGCAAGAAAGAGAAGAACCTGCCCCTCCTTCAGCAGAGAGGCCAGTTGTGACTGAGACTCACGCACTGGCAGCTGCTAACCAGCAAAAAAATGACCGTCTGAGAGAAGCGTTCGGTATCAGCTCTGACTACGTTGACGGCTCATCCTTTCATCCTGAccggaaggagagagagaaggagaagaggGAGCAGGAGAGGCTGGAACGAgagaagcagcagcagaagtACCAgattATTGAGTCTGATAACTTGGATTCATCTCCGGAACGAAAAAAGAgcaggaagaagaaaaagaaaaacaaaagcagagaaAGCTCTGAAAGCCCTTCACCCTCTCCTCGACGAGAGaagaaaaaggacaaaaaaaagaaaaagaaaagAGAAGAATCGGTGAAGAGTGACACAGAGAGTTCATCGGATGACAGAGAAGCAACCaaacgaaaaagaaaaaggagtgACAATGAGACTCCACCTCCCAGTAAGAGCCGAAAACGTCCGAGTGCATCCTCTAGCCCAGCTCACAGCCCATCCCCTCAAAGAGGGAAACCACAGAATAAGTCAGATTCTCGTTCAGATGAGGGGAGGAAAGGGAGATCCCCTGACAGAAGGCGCCGTGGTCATAGTGAGGATAGTCCAAAAAGGATGGAAATCCGAGAGAGGTCACCAAGACGCTCAAGAACACCTGAGCACAGCAGAAGAGATAAAGGGCGTGAACGTGAAAGAGAACAAGTGCAAGAAAAACCTCAGAGAAGACGACTTGACTCCTCTTCGCCATCTCCTCCACCAATTCGGGACAGGCGACCACGGagcgaagagagagagaaaccccCTCAGACAAGAAGACATGACTCCTCTTCACCATCTCCACCACGCAAGCAGCAGCGAGAGCGGCGACAACGAAGCGAAGAGAAGGACAAACCCTCTCAGCGGAAAAGACAGTCTCGTTCTCTGTCCCCCAAGCAGCAGAGAGACAAGAACCGTGGGGACAATGAGAAAAAGAACAAAGGTCAAATAAGACATGACTCATCCTCGTCCCcatctcctcctccttctccacGTAAAGACAGAACAAAAAGAGGACAGagtggagagaaagagaaacccGTTTCTGACAGGGAGAAGAAGAGACATGAGGACAGAtcgagagacagacagaggaaTATCGATAGAGATCTTCCGTCTAGTAGAAAAGATGACAGGGGGCGGGAGAGTGATAAAGGGAAGGAGCGAGACAGAAACCGATCTAGTGACTCAATGTCTCCTGCTAAGCATTCACCTTATGCCAACGGAAGGCAAAAAGAACGAGAGCATGAACTGGAGAAGGAACGAGAAGAACAGCGAGAGAACAACAGAAGACGGGAAGAGGAGATGAAAGAAGAAGCTTTGAGAAAAGccagagagagtgacagagaaaaggagagaaaccGCACGAGAAGAGAAGAAGTGTCTCGATCAGATAGGAAGTCTTCCTCTAGCGGTCTGCTTGAGGACAGACGAGGTGCCAGAGGAAGTGAGACGGAACAAGAGGTGGCCAAGAAAGACAGGAGAATAGAGAAGAGTCCTCAAGACCAAAAGAAAGACAAGCAGATGCAAAAGGAAAAGCCTGGTAAGAAAGGCAAACTGAAAGCTgcaagcagcagcagcagcagcagcagcagtagtagtagtagtagtagcagcagcagcagcagcagtgaaaGTGACAGTGACAGCTCCTCCTCGTCATCTTCgtcttcctcttcttcatcatcttcatcctcagaagatgaaaagaataaaagtgcaaaagaCAACAGTGCTGCTGGTCGGTCAGTTTCTAACGCTGTCATAGCTCAGGCTATTGCACGCAGAGAGAAGGAGAACCGAGGAAGGAATGCAGAGAATGATGAAGGGAAAAAGACATACCCTCCCACACAAAGACAGAGCTCACCCCCCGAGTCCCAGAGAAAAAGGGATGATGCTGATAAAAGACAGCGAGATGTGGAGAGAGAGCGAAGACCTGGCCACTCCTCGTCTCCTTCCATGGGATCTAAAGATCAGGAGCGTGGAAAAGAGAGGTACACTCCCACTGAGAGTTCAAGCCCACCTCCCTCGCCCCCCCAGAGAGGCCGTGACAGGTACACCCCTTCAGAAGAAACCAAATCTCGGAGCAGAGATCGAGGAGGCGAGCGATATAGCCCATCAGAGCTGGAAAGAGAGTCTTCACTTCCCTCGCCTGGCAGAGGACGAGACCGACAGAGTGACCGAAAAAAAGATGCGTCACCTTTGTCTCCGAGGGGGAAAGGAAGGAACGACGTGCCACAGGTCAAACAGATGGCTTCTCGACCTTCACCAAAACGCACTCCACCTCGACAGTACCAGGACCCACAGCGCTCACGATCTCCCAGCCCGAGACGAGGAGCGAGGAGACCTTCACCTTTACGAAACTCATCCCCTTACCGACGAGACCGCAGCCGGGAGCGCctcagagagcgagagagagacagattcAGGGCAAGACCAGTGAACAGAGACCGGGAGCGTTCCAGGGAGAGAAGAACAAGGAGCAGCAGATCTAGGAGTCCCCGAAGACCAAGTCCTCTCTACAGGTCTCGTCGTTCACCCTCTCCTCTGCGCCGGCGCAGAAGTCGCTCACTatcaagagaaagagaaagggagagagagcaggagaggaGGAAGAATCGAGAGCGAGAAAGGCAGCGAGaacaggagaaagaaagagaaagagagcgagaacaAAGAACGAGGGTGCCACCCAAAGATCCCACTCCTCCACACCGGTCTTCATCGTCCTCTTCCTCCAGTTCATCCTCTTCAGCCTCGCCATCTCCTCAAAGACAGATGAAGGGTGTGAAGTCTACAGATGCAGAGATTGACAGAACAAGGGAAATtgatggacagaaaaaaaataagcaatcaGAAAGGAACTTAAAAATTCCATCTCCTAAAGACACCCATCTCCATTCCAACCAATCGCATCAGCGCTCTCGCTCCCGTGAACCACCTGTCCGTTCTAGATCACCAGTGACCAACCAGTCACAAAGCAGGGATCCACCTGGTGAACGATTAAGAGGCCAGTCCCCCTCATCTGTCCATGAGCGGCACCACGGACCACCAGCGAGAGGAAAGACTGCCGTGAATGGGAAACCAGAGAAGGAGACCTCAGGCCAACAGCAGAAGAGAAGCAGCTCAAGctcttcatcttcctcatcatcttccttctcctcatcatcatcttcatcttcctcatctGATAGCTCAGACTCTGAGACAGAGAAAGCCAAAGGGGGTGTTAAAGCAAGTGCAAATAAAGAAGCTGTCAAGAAAGCCAAAAGCCGAgcttcatcatcatcctcatcagaAAGTGAAAAAGATCAGACAAAAAGTCCTCCACGGCCCAAGAGAGTGCCAGCTGACTCACTGAGAGACTCTAGGTCACTCAGTTACTCCCCTCCAGCGAGGCAACGAAGACCTGCACATTCTCCACCGTCACGACGCACCGCAAGCAGGAAGTCGAGAAGCAGATCTCCAGACAGTCGAAGGAGGAAATAattgaaccttttttttgttttctggacTCTTATCTGACCCTCACTGAACTGAATCATCTCTGTATCACATGGAGACTGGAAATGTGACTAGTTTTAATGGTGGTATTTTCACCATTAGTAGAGGAAGGTCTCTCAAAACCTGGTTCTTTGTAACTCGTCCCAAAAGGGaggatttatttttacttttattatggTGTAATTAATGTTTAAGAACAGGCCAGCTGAGACACTGATGCTCTCATCAACTATCGCTCTGTGCCAACAGaggctggacacacacacacatgcacgcacgcacacacacaaaatcacaaGTGTCTGGTGGTTTCTGCCTGTCTGCTACATTGTTCTGAATGTAGATGAACATCTGTAATTTGGTGATCAGAATGAACTATATTCTGTTCCTGCGTATGTGGACAGAGTATGttcctttttgtttatttgtggaaaaaaaaaaaagaaaaataaaatggcagtAGAA

Function

GO: NA

KEGG:

id description
K13172 SRRM2, SRM300; serine/arginine repetitive matrix protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28710 lncRNA upstream 14840 12132629 ~ 12134957 (+) True G19274
TU28698 lncRNA upstream 31022 12118538 ~ 12118775 (+) True G19263
TU28697 lncRNA upstream 31888 12117343 ~ 12117909 (+) False pax10
TU28687 lncRNA upstream 75294 12074231 ~ 12074503 (+) True G19257
TU28685 lncRNA upstream 76724 12072719 ~ 12073073 (+) True G19255
TU28736 lncRNA downstream 69334 12227935 ~ 12228520 (+) True G19287
TU28700 lncRNA downstream 87607 12246208 ~ 12249997 (+) False LOC122341822
TU28784 lncRNA downstream 353325 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA downstream 353325 12511926 ~ 12513721 (+) False G19326
TU29145 lncRNA downstream 522657 12681258 ~ 12681565 (+) True G19579
XM_043235657.1 mRNA upstream 666 12145111 ~ 12149131 (+) True mmp25a
XM_043235777.1 mRNA upstream 5910 12141301 ~ 12143887 (+) True unc119.2
XM_043233744.1 mRNA upstream 22691 12120674 ~ 12127106 (+) True bcl2l12
XM_043233743.1 mRNA upstream 22691 12120674 ~ 12127106 (+) False bcl2l12
XM_043235680.1 mRNA upstream 31858 12114048 ~ 12117939 (+) True pax10
XM_043235314.1 mRNA downstream 581 12159182 ~ 12162641 (+) True thoc6
XM_043234070.1 mRNA downstream 5009 12163610 ~ 12168731 (+) False si:dkey-16l2.16
XM_043234066.1 mRNA downstream 5039 12163640 ~ 12168731 (+) False si:dkey-16l2.16
XM_043234069.1 mRNA downstream 5228 12163829 ~ 12168731 (+) True si:dkey-16l2.16
XM_043234043.1 mRNA downstream 10280 12168881 ~ 12173874 (+) True rnf25
TU28690 other upstream 48945 12092603 ~ 12100852 (+) True LOC122342134
XR_006249731.1 other upstream 315873 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 315873 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 315873 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 780045 11368893 ~ 11369752 (+) True G18949
XR_006249244.1 other downstream 144763 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 353325 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 353325 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 361236 12519837 ~ 12528803 (+) False gtpbp1
TU29192 other downstream 676780 12835381 ~ 12987913 (+) True LOC122332158

Expression Profile