RNA id: XM_043234069.1


Basic Information

Item Value
RNA id XM_043234069.1
length 2178
RNA type mRNA
GC content 0.39
exon number 7
gene id si:dkey-16l2.16
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12163610 ~ 12168731 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTGATCTTATTATCTTAGAGCATCTGTGGCTAGTTAAGTAGCTAGCCTAGCTGCGTTTCAAAACAACTTGAGTAAATCACAATCGAGGAGTTGTCGAGTTGAGTAATGGACACAAGTTTGATCAGGCGCTTAAAAGAAACGGAACTCAAGAAGCAGATCAAGGCGAGAGTTCAGCTTGGTGTTTGGTAGGATCGCATGTTTTTACAGgatTAGGGCTTAAAGGGGACCGACTGGGAATTTTCTCACTTCCGGTTTGAACCTGCATTCCTACAGTGTTTTGGAGTGGCAGCGATCTTTCAAAGTGTGGGAAGCTACCAGTCCCTGCATGCATCAGATAAAAAGGCGAAATGGGATTGTTGTGACCGAGATGCCGTCTGTATATCTAGGAAATCAAGATTTGGAGACGAAACAACTTGGATCTCAAACAAACTGCCCTGTTTCCGGATGATTTGATTCCTGCTGCACTCCTAGCTCTGCGTTATGAGCGCCATCAGCGATTAAAGAACCACTTACTTTGTAATCTGATTCATTTGATACTTAACCACAACAATGTGGTGATGTGTTTGCACTTGAGGGGACGAGCAGTACATTTCATGTAGATTTTAACTGTGGATCAAAAGCAATGGAAATATAGTTTTAAGATGAACTAAAAATACCGCACGGAAAGTGCAAACGTGTTACAGACAATGCAAAATCACTGATTGATGAATTGGAGTTCACGGAAATCACTCGGATGCATCATTTTGCACTTGAGTTTTAAAGTAAACTGGAAGGACGGTCACATGATGCTCGAAGTATTTCACCCTAAAACTTCAGCACTAAACAGCCTGGTACTTTAAGACACAGGAAACGTGACAGGGGAATTGAAAGCTGTCGTTTCATGAGGATACATTTTGAACAGAAGAATGGCAGGAAAAGACTACCATCATCTCTTCAAGTTGCTCATCATTGGTGACTCCAATGTAGGGAAAAGCAGTTTGCTCCTACGATTCGCAGACAACTCATTCTCTGGCAGTTACATAACTACTATTGGAGTTGACTTTAAGATTCGCACGGTAGAGATAGATGGCGAAAGAGTTAAACTCCAGATCTGGGACACTGCAGGGCAGGAAAGGTTCAGGACCATCACCTCGACGTATTACAGAAACACTCATGGTGTCATCATCGTTTACGATGTTACAAATCCTGAATCGTTTGTCAACGTGAAAAGATGGTTAAACGAGATATCACAGAACTGTGACAATGTCTGCAAAATTTtagTTGGAAACAAGAATGATGATCCTTCTAAAAAAGCTGTGGAAACTCAAGAAGCTCTGCGCTTTGGAGAATCAGTTGGTGTGAGGTTATTTGAGACAAGTGCTAAAGAGAATATCAATGTAGAAGAGATGTTCATGGCTTTCACTCACATGGTCCTTCGGGCCAAGAAACAGAGCCAGAGtcgagcagagagagagagggagagagaaaaggacaCTGTCCATATAAATTCGCACAGGGACAGAGAAAGGAGGAAGAAAGGGAAGAAATGCTGTTAGGAAAGAGGGACAAATCGAACACCTTTGCAACTCTGATCCTTTGGGTCATGTTTCCAGCTCagaaatgtgacttttttttatgttaacacTGCGCTTAGATAAAACCaagaggaataaaaaaataacttgctATTATGTGCCGAACATCAGCGTTTGTTTacacaaatgtttatcaattaaatgttttttgtttgtttgtttgtttttttacaaaagggGAATTGACTGGCATGGATTTACACTGGCATCGAAGGCCTGGTCCAGGAAAGACACTATATTCAAAATGTCTTATGCGTTCCACTGTGATTAGTGAGAGGTGTTTCTTGGATTAAAATTGACTTGATATATGTCATTAAtgtatgcaaataataaaatagcaataaaatatgattttaaaaatcacaacaaCAATGTTCATTTCTGATATCTTGAAAAAGTAATGTATGTAGGTGACCCGTGCTGGACTGATTAAATGCTCACTGTCCTTTGCcatataaaatgctaaaatgcacaTGTTTCTGAGCCAGAGTTGTTGTTAGATTAACCTACTAAATGAACGGTGTAGGAAccatttctttatattattaaatttgacCTCTGAGTCACGTTCATGactcatgaataaaaaatgtattaaatta

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07876 RAB35, RAB1C; Ras-related protein Rab-35

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28710 lncRNA upstream 28872 12132629 ~ 12134957 (+) True G19274
TU28698 lncRNA upstream 45054 12118538 ~ 12118775 (+) True G19263
TU28697 lncRNA upstream 45920 12117343 ~ 12117909 (+) False pax10
TU28687 lncRNA upstream 89326 12074231 ~ 12074503 (+) True G19257
TU28685 lncRNA upstream 90756 12072719 ~ 12073073 (+) True G19255
TU28736 lncRNA downstream 59204 12227935 ~ 12228520 (+) True G19287
TU28700 lncRNA downstream 77477 12246208 ~ 12249997 (+) False LOC122341822
TU28784 lncRNA downstream 343195 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA downstream 343195 12511926 ~ 12513721 (+) False G19326
TU29145 lncRNA downstream 512527 12681258 ~ 12681565 (+) True G19579
XM_043235314.1 mRNA upstream 1188 12159182 ~ 12162641 (+) True thoc6
XM_043234868.1 mRNA upstream 5228 12149797 ~ 12158601 (+) True srrm2
XM_043235657.1 mRNA upstream 14698 12145111 ~ 12149131 (+) True mmp25a
XM_043235777.1 mRNA upstream 19942 12141301 ~ 12143887 (+) True unc119.2
XM_043233743.1 mRNA upstream 36723 12120674 ~ 12127106 (+) False bcl2l12
XM_043234043.1 mRNA downstream 150 12168881 ~ 12173874 (+) True rnf25
XM_043234036.1 mRNA downstream 527 12169258 ~ 12173874 (+) False rnf25
XM_043234051.1 mRNA downstream 527 12169258 ~ 12173874 (+) False rnf25
XM_043234060.1 mRNA downstream 5545 12174276 ~ 12177729 (+) True kat8
XM_043234668.1 mRNA downstream 10492 12179223 ~ 12182498 (+) True si:dkey-16l2.17
TU28690 other upstream 62977 12092603 ~ 12100852 (+) True LOC122342134
XR_006249731.1 other upstream 329905 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 329905 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 329905 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 794077 11368893 ~ 11369752 (+) True G18949
XR_006249244.1 other downstream 134633 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 343195 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 343195 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 351106 12519837 ~ 12528803 (+) False gtpbp1
TU29192 other downstream 666650 12835381 ~ 12987913 (+) True LOC122332158

Expression Profile