RNA id: TCONS_00010116


Basic Information

Item Value
RNA id TCONS_00010116
length 1288
RNA type mRNA
GC content 0.43
exon number 8
gene id XLOC_005259
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16592408 ~ 16595406 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGTCAGTAAGGTTTGCTTGTGAAAGtcTTCCAGGCAGGATGATGTTTGCTTTGCTCGTCACGCTGTACATAAGTGCAGTGTTTGCTGCTCCATCTATAGACATCCAGTTAGATGACCACTGGAACTCCTGGAAGAGCCAGCATGGAAAAAGCTATCATGAGGACGTAGAGGTCGGGAGGAGAATGATTTGGGAGGAGAACTTGAGAAAAATTGAGCAACACAACTTTGAGTATTCCTTAGGAAATCACACCTTTAAAATGGGAATGAATCAATTTGGTGACATGACAAATGAGGAGTTCAGACAGGCAATGAATGGTTATAAGCATGACCCCAACCGGACGTCACAGGGCCCGTTGTTCATGGAACCCAAATTTTTTGCAGCCCCACAACAGGTTGACTGGAGACAGAGGGGCTATGTTACTCCTGTCAAAGACCAGAAACAATGTGGATCTTGCTGGTCTTTCAGTTCAACGGGTGCATTGGAAGGTCAGCTCTTCCGTAAAACTGGAAAGCTGATTTCTATGAGTGAGCAAAACTTGGTGGACTGTTCCAGACCACATGGCAATCAAGGGTGTAATGGAGGCCTCATGGACCAGGCCTTCCAGTATGTTAAAGAAAACAAGGGGCTGGATTCTGAGCAGTCATACCCTTATCTTGCAAGGGATGATCTGCCATGCCGCTATGACCCCCGTTTTAATGTCGCTAAAATCACCGGATTCGTGGACATTCCCAAAGGTAATGAGCTTGCCCTAATGAATGCTGTTGCTGCTGTGGGTCCTGTATCTGTTGCTATTGACGCATCACATCAATCTCTACAGTTCTATCAGTCTGGCATCTATTATGAGAGAGCATGTACCAGTCAACTTGATCATGCAGTCTTGGTGGTTGGCTATGGTTATCAGGGTGCTGATGTTGCTGGGAATAGATACTGGATTGTGAAGAACAGCTGGTCTGACAAATGGGGTGACAAAGGCTACATCTACAtggcaaaagacaaaaacaatcaCTGTGGCATTGCGACAATGGCCAGCTATCCCCTAATGTAAGGCCACTGGAGCCTTCTCTGCATTCTGAAAAAGACACAGTTAtggtttctctttttttaatgtgttatttattcaattttttcaaTTTGTTCTGCTGTTAGGGCTATGATAGTAGTATTTTAGGAAATTCcatttttcctaaaaaaaatatttcatatatgCTTGTTTATCCAGGAATGAGAATTCTGTACTGGATCTATTTCACCTGCAAATTGATAAACATAAAATTTTCTTGATGGC

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-52 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in immune response and proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome.

Ensembl:

ensembl_id ENSDART00000166798

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010110 lncRNA downstream 140394 16446820 ~ 16452181 (-) True XLOC_005254
TCONS_00010109 lncRNA downstream 145183 16446239 ~ 16447392 (-) False XLOC_005254
TCONS_00010106 lncRNA downstream 145303 16446228 ~ 16447272 (-) False XLOC_005254
TCONS_00010107 lncRNA downstream 145305 16446230 ~ 16447270 (-) False XLOC_005254
TCONS_00011111 lncRNA downstream 732706 15857732 ~ 15859869 (-) True XLOC_005250
TCONS_00011112 lncRNA upstream 147646 16743052 ~ 16746547 (-) False XLOC_005265
TCONS_00011113 lncRNA upstream 343402 16938808 ~ 16951646 (-) True XLOC_005271
TCONS_00010804 lncRNA upstream 346798 16942204 ~ 16943248 (-) True XLOC_005272
TCONS_00011114 lncRNA upstream 369250 16964656 ~ 16966808 (-) False XLOC_005273
TCONS_00011115 lncRNA upstream 369698 16965104 ~ 16966735 (-) True XLOC_005273
TCONS_00010113 mRNA downstream 34469 16555603 ~ 16558106 (-) True XLOC_005257
TCONS_00010112 mRNA downstream 67848 16522472 ~ 16524727 (-) True XLOC_005256
TCONS_00010108 mRNA downstream 140375 16446230 ~ 16452200 (-) False XLOC_005254
TCONS_00010102 mRNA downstream 157425 16405598 ~ 16435150 (-) False XLOC_005253
TCONS_00010101 mRNA downstream 211982 16378956 ~ 16380593 (-) True XLOC_005252
TCONS_00010118 mRNA upstream 21732 16617138 ~ 16619757 (-) False XLOC_005261
TCONS_00010119 mRNA upstream 21734 16617140 ~ 16619449 (-) True XLOC_005261
TCONS_00010120 mRNA upstream 39036 16634442 ~ 16636627 (-) True XLOC_005262
TCONS_00010122 mRNA upstream 96178 16691584 ~ 16694092 (-) False XLOC_005264
TCONS_00010123 mRNA upstream 96180 16691586 ~ 16720196 (-) False XLOC_005264
TCONS_00010114 other downstream 20266 16572195 ~ 16572309 (-) True XLOC_005258
TCONS_00010111 other downstream 99107 16493352 ~ 16493468 (-) True XLOC_005255
TCONS_00010104 other downstream 157737 16415810 ~ 16434838 (-) False XLOC_005253
TCONS_00010105 other downstream 157740 16431816 ~ 16434835 (-) True XLOC_005253
TCONS_00010103 other downstream 175818 16408308 ~ 16416757 (-) False XLOC_005253
TCONS_00010117 other upstream 3337 16598743 ~ 16598857 (-) True XLOC_005260
TCONS_00010121 other upstream 59275 16654681 ~ 16654795 (-) True XLOC_005263
TCONS_00010126 other upstream 147646 16743052 ~ 16746316 (-) False XLOC_005265
TCONS_00010127 other upstream 147876 16743282 ~ 16746547 (-) True XLOC_005265
TCONS_00010131 other upstream 306239 16901645 ~ 16901759 (-) True XLOC_005269

Expression Profile

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