RNA id: XM_043237321.1


Basic Information

Item Value
RNA id XM_043237321.1
length 2800
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC122343032
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24568994 ~ 24574432 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTGTAGTTCTCTTAAATGTTCAGAGTAACAACGTTGTCCTGAGTGACTTTACGAGTGACAGTAAACCTCTGTGTCCCTTCAGTGTGATGAGAAACCGCTCTTATAAAACTAAACCgaatctgaaaaacacacacgagTGAAAACAAACGTTTGGATGAAAACGCGGAATATATGGTTATACTAAAGTCAGAAGTCCAGCCACGAAGTGTCCAGAAATggcgtttattaaagaggagagtgaagacTTCCGGATTGAAGAGGTTTTCAGTGTCAAACTAGAAGATTTTGAGCAACTAATGGTTAAAGTTAAAGAGGAGAATGAAGTGCTGAATGAAACGGAAGAGAAAGATCACCGTGATTATATAACTGAAGAAAACTCGTTCACTTACTCGCAGACTAAAAAGTCTTCCCCACGAAAAAGAGTTAAAGCGATACGAACCAGAAGTAGCTTAACCTGCTTTCAGTGTGGAAAGCGTTTCACTCAACATGGAAGCCTTAAACTCCACATGAAAACTCATACAGAAAAACCCCCTTTCCCCTgtcaacagtgtggaaagagtttcaagCAGAAAACGAATCTTAACCGGCACATGagaatccacaccggagagaagcctcaCACCTGCCCGCAGTGCGGGAAGGGTTTCGATCAAAAAACCAACCTTAACAGGCACGTGAGAACTCATACAGGAGAACCCCCTTTGAGCAGCGAACAGGGTGGAAAACATTTCAGTCAAAAGGTAGACTCTGATTACCGTGCGAAAGTACACACAGGAGAAAGCCCTTTCGCCTGCCAGCGCTGTGGAGTACGTTTCACTCAGAAAGGAAGCCTTAACAGGCACATGagaatccacaccggagagaaaccatacacctgccaacagtgtggagcACGTTTCACTCAAAAAGTGGTCCTCGACAGGCACTTGAGGAGTCACACCAGTGAAAAGCCTTACAcgtgccaacagtgtggaaagagcttcGATCGAAGCGAAAAGCTGGACGCGCACACGAGAGTTCATAAAGGTACACGGCCTTTCACCTGCCTTCAGTGCGGGAAAGGTTTCAGTCAAAAAACAAACCTTAACCGACACGTGagaatccacaccggagagagaccCTACTCCTGCCCTCAGTGCGGAAAGAGATTTCTCCAACACGTCAACCTCAAAGTCCACGTGAAAATCCACACTCGGGAGAAAACCTTCACGTGTCGTCGGTGTGGAATGAGTTTTGACCGAAACGAAAAGCTTAAATCGCATGTgagaattcacaccggagagcAACCTTTCTcatgccaacagtgtggaaaaggTTTCGACCGACACGAAAGCCTTAAAATCCACGTCAGAATGCATACAGGAGAAAGCCTTTTCACCTGTCAACGGTGTGGAAAACGATTCAACCGTAAAAGAAGCCTCAAGTACCACACCACAGTTCACACTATAGAAAAGCCTTACACCAGAAAACGGTGTGGAGTTAGTGTCACTCAAGAAGGGATTCTCAGTAAGGATATGAAAGTTCACACTTAAGCCCTCGGTGTGGAGAGAGTTTCCTTCAACATGGACACCTTAAACTCCACACGAGTACTCATACAAGAGAAAGGCCTTTCACCTGCCAACAGGGTGGAAAGcgtttgaaaaaagaaaaggaaagctTAATTACACGCCCTTAGCCCTTTACCTGCCAGCACTGTGGAGTAAGTTTCACTCAAAAAGTGTCTCTCGATAGGCGCTTGAGAAATACTAGGGAAAAGCCTCACACATGTAACGGTGTGGAAAGAGATTTCTCCAACACGTAAACCTTAAAGTCCACATGAAcgtccacactggagagaaaccacGCACCTCGCAACAGTGTGGAAAGTTTTTTGATCGACTTTAAAATCCACATGAAAATTCATCCAGAAAGCCTCTGAGTGGAAGAGACAGGCACATGAAGAgatcacactggagagaaaccctACGTATGCCCTCAGCGTTCAGCATGGAAACCAACATGAACATGGAAGTCGATATATGAGAACTGGCACTGGAGAAAAGCAGAACACGTGCCACTCCTCCAGAGTTTCAATCAACATAGAAACCTTAAAGTCCGTGGAAGAGCTCGTACTGGAAACAAACCATTTCAACTCACATCAGAATCACACTGAACTGTGTTGCGTCTCCGGTGCTGAGTTACTGAAACTGAATGAATccacatataaaacaaatcaaTgtccaaacacacagaaacatgccGCTTAAAGAGGAGAGCAAAGCCTTCAGGATTGAAGAAGTCTAACCAGAAGATTTCAAAGAACTAACAGaCCTGACCGCATTCAAAGTGGAGAATGAAGAACCGAATGAAATGATCAGAATGAGAGCAATCGTGATTTGGTAACTgaagaaatgtcttttaagtGCTCGCAGACTAAAAAGACTAGACAAACTAGAAGCCGTTTAACCAGCATTCGGTGTGGACAGTGTTTCACTCAACATGGAAACCTTCACATGCAGAAGAAAGACCCTTCATCTGTCAACAGTGTGGAAAGTATTTCAAACGAAAAGGAAACCTGAAGTAGCGCATGAGAGTTCACAAAGGCCAACAGGGTGGAGTAAGTTTCGTCTGAAAAGGAAAGCTTGAGTATCACATGAGAGTACGTACAGAAGAAAAACCTTACACATGtcatcagtcaatcaatcaatcaatcctttttatttatatagcgcttttaacaacacaggttgcatcaaagcactgtacagtataatgacagggatgtataatgacgagagtgaccaatttcttattaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45587 lncRNA upstream 82231 24456022 ~ 24486887 (+) True G30812
XR_006250692.1 lncRNA upstream 149550 24417843 ~ 24419568 (+) True LOC122343172
TU45595 lncRNA upstream 254830 24310339 ~ 24314288 (+) True G30819
TU45594 lncRNA upstream 254830 24313194 ~ 24314288 (+) False G30819
TU45514 lncRNA upstream 559227 24003642 ~ 24009891 (+) True G30754
XR_006250675.1 lncRNA downstream 61920 24636352 ~ 24638266 (+) False LOC122343159
TU45650 lncRNA downstream 61932 24636364 ~ 24638654 (+) True LOC122343159
TU45666 lncRNA downstream 98535 24672967 ~ 24673594 (+) False LOC122343086
TU45676 lncRNA downstream 140265 24714697 ~ 24714998 (+) True G30877
TU46134 lncRNA downstream 414435 24988867 ~ 24989274 (+) True G31223
XM_043237350.1 mRNA upstream 66988 24498607 ~ 24502130 (+) True LOC122343045
XM_043237289.1 mRNA upstream 71538 24493077 ~ 24497580 (+) True cct2
XM_043237313.1 mRNA upstream 83765 24480242 ~ 24485353 (+) True terfa
XM_043237415.1 mRNA upstream 92335 24472021 ~ 24476783 (+) False LOC122343091
XM_043237416.1 mRNA upstream 93824 24472007 ~ 24475294 (+) True LOC122343091
XM_043237279.1 mRNA downstream 2731 24577163 ~ 24581794 (+) True LOC122343010
XM_043237238.1 mRNA downstream 21421 24595853 ~ 24605817 (+) True LOC122342982
XM_043237169.1 mRNA downstream 32605 24607037 ~ 24619391 (+) True LOC122342946
XM_043237478.1 mRNA downstream 64657 24639089 ~ 24646601 (+) False LOC122343125
XM_043237438.1 mRNA downstream 74535 24648967 ~ 24653215 (+) True LOC122343105
XR_006250668.1 other upstream 98251 24465454 ~ 24470867 (+) False LOC122343023
XR_006250669.1 other upstream 102718 24454325 ~ 24466400 (+) False LOC122343028
XR_006250666.1 other upstream 427707 24133050 ~ 24141411 (+) False LOC122342990
XR_006250665.1 other upstream 446298 24117289 ~ 24122820 (+) False LOC122342976
TU45342 other upstream 1401861 23163769 ~ 23167257 (+) False LOC122342321
TU45649 other downstream 61932 24636364 ~ 24638654 (+) False LOC122343159
TU45653 other downstream 65697 24640129 ~ 24646571 (+) True LOC122343125
TU45681 other downstream 146992 24721424 ~ 24728447 (+) True G30882
XR_006250558.1 other downstream 169416 24743848 ~ 24767552 (+) False LOC122342408
XR_006250648.1 other downstream 1060610 25635042 ~ 25684620 (+) False LOC122342771

Expression Profile