RNA id: unassigned_transcript_457


Basic Information

Item Value
RNA id unassigned_transcript_457
length 73
RNA type tRNA
GC content 0.55
exon number 1
gene id trnak-uuu_23
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25903960 ~ 25904032 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcctggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46343 lncRNA upstream 86396 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 86505 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 86505 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 116059 25787380 ~ 25787901 (+) True G31380
TU46232 lncRNA upstream 217975 25680141 ~ 25685985 (+) True LOC122342771
XR_006250606.1 lncRNA downstream 12357 25916389 ~ 25917199 (+) True LOC122342592
XR_006250570.1 lncRNA downstream 257459 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 532316 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 539474 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 574684 26478716 ~ 26478933 (+) True G31412
XM_043236264.1 mRNA upstream 175309 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 194323 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 194323 25703962 ~ 25709637 (+) False ogfr
XM_043236865.1 mRNA upstream 218088 25635051 ~ 25685872 (+) False LOC122342771
XM_043236137.1 mRNA downstream 70845 25974877 ~ 25977623 (+) True LOC122342357
XM_043236141.1 mRNA downstream 269162 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 478884 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 860921 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 1100669 27004701 ~ 27006306 (+) True LOC122342369
unassigned_transcript_456 other upstream 1428 25902451 ~ 25902532 (+) True trnas-uga_22
unassigned_transcript_455 other upstream 1775 25902105 ~ 25902185 (+) True trnas-aga_24
unassigned_transcript_454 other upstream 2584 25901304 ~ 25901376 (+) True trnak-uuu_22
unassigned_transcript_453 other upstream 4077 25899803 ~ 25899883 (+) True trnas-uga_21
unassigned_transcript_452 other upstream 4420 25899459 ~ 25899540 (+) True trnas-aga_23
unassigned_transcript_458 other downstream 738 25904770 ~ 25904851 (+) True trnas-aga_25
unassigned_transcript_459 other downstream 2590 25906622 ~ 25906694 (+) True trnak-uuu_24
unassigned_transcript_460 other downstream 3125 25907157 ~ 25907238 (+) True trnas-uga_23
unassigned_transcript_461 other downstream 3316 25907348 ~ 25907420 (+) True trnak-uuu_25
unassigned_transcript_462 other downstream 4118 25908150 ~ 25908232 (+) True trnas-aga_26