RNA id: TU53796


Basic Information

Item Value
RNA id TU53796
length 917
lncRNA type sense_over
GC content 0.38
exon number 3
gene id G36503
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14321556 ~ 14326754 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATTGGTCAAACATGAACCGGTCCATCTTTCTTCTGTCCTTGGTCATTCTGAGCTGCCTGACTTTTACTGAGGGTCAGCGGATGTTCATAAGCAGGCGATGCTTGTGCTCCAGAACATATGAGAGTGTGCAGCCTAGAAACATCAAGGAGTGGAGAGTGCATGAACCAAGCGCATCCTGTAAAACCACTGAGATTATTGTGATTTTGAAGAAACCTCACAAAAAAGTCTGCCTGAATCCCAATTCAAAACTGGGACGCAAACTGCTAGAAATGAATTAGAGCTGATTTCCATGAACACACCGGATCATCCATGGATGAAATATCAAGAAGTGCCCAGGGTTCTTTTGTGGTTGCAGCTTTGAAGATAAGGAGAAATGGTGTCTCTCGGTAAACTGATAGCCTATCATTAAAAAAGGATAAAAGATAACTTAATGACCCAACTCTTACTGTAAGCAATAGCATACAGTCAAACAGATGCACACCTCtcgcatttcttttcttttttcagctgCAGTAGATCAAGACTGAACACACTTTCTAAAAAAGGCTAGGCTATGACACACACAGAATACTCTGTAATTAGgtttaaataaaaggttttattcaATTGAGTGTATCATAAAAAGGAGAGGCATGAAAGGGAGGAATTAGATTGGCATGGTTTTCTTGCACCAAATTAAAGTTCAGTAGGACTGAAATTATCAGTCCAAAAgagaatgttatttttgttcGTTTATTTgttcgttgttgttgttgttttgtaattggAGTGaatgttcatgttgttttttataattaatattttttaatgaaatatccATTCATGTTGAATTAAGAAAGTCTTAAATCTGTTAGGGTATCTGGTCAAGCTACACCGCcttgttttcagtgtttctgcTAAAGAAGCCAATAAAAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53795 lncRNA upstream 1670 14321556 ~ 14322681 (+) False G36503
TU53675 lncRNA upstream 276857 14046777 ~ 14047494 (+) True G36420
TU53657 lncRNA upstream 316949 14005771 ~ 14007402 (+) True G36408
TU53655 lncRNA upstream 320820 14000526 ~ 14003531 (+) True G36406
TU53654 lncRNA upstream 324014 13999100 ~ 14000337 (+) True G36405
TU53787 lncRNA downstream 6314 14333068 ~ 14335183 (+) False LOC122345214
TU53790 lncRNA downstream 6314 14333068 ~ 14337765 (+) True LOC122345214
TU53801 lncRNA downstream 15169 14341923 ~ 14342507 (+) True G36507
TU53804 lncRNA downstream 16410 14343164 ~ 14343769 (+) True G36509
TU53805 lncRNA downstream 19130 14345884 ~ 14346835 (+) True G36510
XM_043240101.1 mRNA upstream 1654 14321528 ~ 14322697 (+) True cxcl11.8
XM_043240102.1 mRNA upstream 1654 14321532 ~ 14322697 (+) False cxcl11.8
XM_043238980.1 mRNA upstream 3428 14315699 ~ 14320923 (+) True LOC122345144
XM_043238979.1 mRNA upstream 9750 14311644 ~ 14314601 (+) True LOC122345143
XM_043238981.1 mRNA upstream 14275 14306837 ~ 14310076 (+) True LOC122345145
XM_043239124.1 mRNA downstream 6269 14333023 ~ 14334228 (+) False LOC122345214
XM_043240110.1 mRNA downstream 20808 14347562 ~ 14349991 (+) True mrpl1
XM_043238214.1 mRNA downstream 58913 14385667 ~ 14455284 (+) True fras1
XM_043239706.1 mRNA downstream 128663 14455417 ~ 14458914 (+) True LOC122345512
XM_043239705.1 mRNA downstream 132700 14459454 ~ 14463721 (+) True LOC122345511
XR_006250972.1 other upstream 19047 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other upstream 19047 14300043 ~ 14305304 (+) False LOC122345142
TU53776 other upstream 31851 14290420 ~ 14292500 (+) True G36495
TU53623 other upstream 338645 13984097 ~ 13985706 (+) True ins
XR_006251084.1 other upstream 1517135 12803952 ~ 12807216 (+) False LOC122346073
TU54000 other downstream 320735 14647489 ~ 14651911 (+) False fgf5
TU54012 other downstream 391778 14718532 ~ 14720487 (+) True G36640
TU54916 other downstream 2157248 16484002 ~ 16560732 (+) False G37227
TU54918 other downstream 2157248 16484002 ~ 16560732 (+) True G37227
TU54920 other downstream 2159866 16486620 ~ 16561741 (+) True G37228

Expression Profile