RNA id: TU53654


Basic Information

Item Value
RNA id TU53654
length 1114
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G36405
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13999100 ~ 14000337 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAGCTGTCTGTATGCTGCTGcaacagaaattacacactcAACTGTCTGTGACATTTTCCTCGCGTATTTAAATCAGGGTGTGCAGTTATAATAAATTAGCGCGACTCGTCTATGTCGGTTTATTCTACAATGCAGCGGTACATAGCCACTAACAAGGTGCACATCACGTGAGGAAAATAGTCTGCCAACTTATAACATTCTGAGATTATTAGAGTGCGAGATAAATCCGTTTTCAGTGCAACCAAGGCGCTGCCTGCACAATAGACAACACTCGCTTGTGTTTGTACATACAATTTCCCTTCTGTAGCTACTACTCCACTCCTTATTTAAACATATTCGATTTATAGGCTTCTCAAATGGCTGAAAACTGTCACGAAGGTGACACGGTCTACTCTGCCggttaataattgttttaacgAAACACCGGGGTCAATACATAGATACATACCAGTGCCTTTCTCCGTTCTCCCTTTCCCTTCTCAATCCCTCTTCCCTCGTCCAGGCCAGCGCAAGAGGGCTTACAACCGGCTCGGTCAGTGTTGTTGGAAACTGATCTCGCGTTCGCATAGAAACGGCTGCGAAAATCCACCGACGGCTAAACATATCCAAACAAAGAAATGTCCTTTCTTGGGAGGCCAGTCGTTTCCGTGCAGAAAAGGGCTTGTTTTAATTTCTTCCTCCGGCCTAAGCACGTTGGTTTTGATCTCTTATAATGCCCTTTGTTGTGGCCATAAAATGCTGATTTCACCGTGTGCAGACGGCATGCAGCGATGCCTGTACACTGAGACACAACAACCAGTTTTTCGTAGCCAAATCACGAGCAATCTGGGCCacgcatgtttttaaatgttacgaGATATATACATTGTGCGTGAGGGTGAAAGTGGTTGTCCAAGCCTCCCGATAATGGCGGTCCCTACGCCCGAGCCCAACTCCGAGTCTGCCCTCTTTCGCTCTCCTTTTTTGAGGATAAAAGAGGGTTACTGAGACAGCCGAGACTCGCCCAGTGGCGCATGGACAACAGCACAGCGCTGAGCCAATTACAGGAGCCGAGCTCTAGCGCGCGCGCGCGGACGCAGGCCCGACCTAAAGGCGAAGCAGCATCCTTTCAA

Function

GO:

id name namespace
GO:0046873 metal ion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53521 lncRNA upstream 24341 13974532 ~ 13974759 (+) True G36332
TU53340 lncRNA upstream 266644 13731969 ~ 13732456 (+) True G36198
TU53333 lncRNA upstream 277534 13720785 ~ 13721566 (+) True G36191
TU53304 lncRNA upstream 350562 13647926 ~ 13648538 (+) True G36168
TU53263 lncRNA upstream 418302 13566977 ~ 13580798 (+) True G36141
TU53655 lncRNA downstream 189 14000526 ~ 14003531 (+) True G36406
TU53657 lncRNA downstream 5434 14005771 ~ 14007402 (+) True G36408
TU53675 lncRNA downstream 46440 14046777 ~ 14047494 (+) True G36420
TU53795 lncRNA downstream 321219 14321556 ~ 14322681 (+) False G36503
TU53796 lncRNA downstream 324014 14324351 ~ 14326754 (+) True G36503
XM_043238331.1 mRNA upstream 13394 13984369 ~ 13985706 (+) False ins
XM_043238328.1 mRNA upstream 15372 13978210 ~ 13983728 (+) True panx1b
XM_043238330.1 mRNA upstream 16798 13978210 ~ 13982302 (+) False panx1b
XM_043238520.1 mRNA upstream 22080 13975414 ~ 13977020 (+) True epd
XM_043239845.1 mRNA upstream 34061 13944782 ~ 13965039 (+) False myo1ca
XM_043239652.1 mRNA downstream 9986 14010323 ~ 14014376 (+) True tmprss4b
XM_043238797.1 mRNA downstream 33110 14033447 ~ 14037169 (+) True pafah1b2
XM_043238796.1 mRNA downstream 38633 14038970 ~ 14041059 (+) True apoa1a
XM_043238507.1 mRNA downstream 56926 14057263 ~ 14059780 (+) False LOC122344888
XM_043238508.1 mRNA downstream 56927 14057264 ~ 14059780 (+) True LOC122344888
TU53623 other upstream 13394 13984097 ~ 13985706 (+) True ins
XR_006251084.1 other upstream 1191884 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 1293859 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 1482992 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 1743428 12249138 ~ 12255672 (+) True G35720
TU53776 other downstream 290083 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 299706 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 299706 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 647152 14647489 ~ 14651911 (+) False fgf5
TU54012 other downstream 718195 14718532 ~ 14720487 (+) True G36640

Expression Profile