RNA id: XR_006250972.1


Basic Information

Item Value
RNA id XR_006250972.1
length 2247
RNA type transcript
GC content 0.38
exon number 11
gene id LOC122345142
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14300043 ~ 14305304 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGATCTTTGGCCCCCAGAAAGCGAAAggacttttattctgtattGTTGATTTTATTCCGAGCGCAGCAGGCAGCAGGCAGCGGACAAGATTAAACAACAATCAAGTAACCAGGACAAAACAACAGttaatttaaaacaagaaatatgATCCAGCACCAAAGTGAAATTATTAAAGGAAAGCACTTCTTCATAGTTGAGATGGGCAAATCGGACATTTTTCGAAGGGAAGTTTTAGGTTATCTCCAAAAACATAGGCCTGGATGGATAGAGACGCGCAGTGTAGAAGACTGTGATGTGATTCTGGTTTTCTGCCCCATTGTTTCACGGGCCGGAACCGACATTGATGCTGCTTTGAATGAGCTTAATACGTATCCAGCTTCCAAACCAGCTATATTCATGGTGTTCCATCACACATTTGATCGTGAAAAGGCTGTACCGGACAGCGGCACGTATTTAAACAGGAGAGGTGTACTCGCAGTGGACTGTCTGTTCCATGAAGACATGGGGTTGTTGAAATGCAAAACTAATGATGAGGCACTGACCAAAGTTGTTCTCCATCTCAAGCCTCAGCCTCAAGATCAACCGAAACTTCGTAAATATATCATTCAAGCAGTTATCGCTGCTTTACTTTTCTATGCAATTTACAAATTGCAGTTCAGATGAtgtggaacacacacacaaaagtgcAACGTATGGTCTGATAATGCGAAAGTGATAGAAGATAAATTGCTTCttatcatatatattaaatgtatttttttcatttgatgtaTGCAAAGTAATAATTGTGTTTCATAGCCTGCATGTGCACTAATATTAAGACTTTAGATTGAAAAGTTCAGTGGCATGAGTGACCGACAGTTGTATTACTTCTATTGTACTCAGGCATTAAACTATggcacaaatatataaataaccaaGTTTTGTGGGGACTTAATGTTACTGATCTCTGTATAAATAAAGCGAATCTTGATTGCAAACGGGTCTCAAAATTTCTGAAGTATGCTGCAAAATTCAAACATGCTACTTAAGAATAAGACGTTTTCGGCACACAGGCCTATCTGTGGTCAATGAATAACTAGAGGAATTATataataagtttaaatattCATGACATGATCAAATCCCGCACACCAGGACTTCCTTAAAAAACTTCAACATCAACATTCCAACAAAACCAAACTTTTCGACGTCTACGATTTGTCTAAAGCccagggtaggtttaggggcggggttTGGCGTACAAAAAATACGATTTGCCAACTTGTAAAATACGTACATTTTAGCAAAAATCATATCTTACGAATTTGTACCTCGTAAAATATGGCTCGTTATATCAGGTTGGGTTCTTCCTGTTGTCTCGCGAGTAAATGTTGTATAcgttgtaaatgtatatatcacGTGGTCGACTGTCAACCAATAGGGTAAGAGCAACAAAGTGAAAGGACGTTTACTCCGAGACGCAGCGAGCAGCAGGGAAGgtagaagaagaagagagaaaaattaACCAATGCCCAGTAGAGATGTTCGAACCAATTGAAGGAAAATGCTACACCGTAATCGAGGCTGGCAAGTCATGCATTGTGCGAAAGCGGATTTCAGATCATCTTCAAaagcaaaaaccttttttgaaaGAGGTGCACAGTGTAGAAGACTGTGATGTGATTCTGGTTTTCTGCCCCATTGTTTCACGGGCCGGAACCGACATTGATGCTGCTTTGAATGAGCTTAATGCATATTCAGGAAGGTTGTTGTGAAATCCTATGGAGGCATATCAGTGGCCTGTGGTATTCTTTCTGTCGGCTACTTGGCATAAAGAAGGCTGGTGAACGGACCAGACTGATAAATGaagattaagaaaaaaatgtctggAAAGTAAGAATGAAAACCTAAAGCATGATTTCGAAAATATGAATGATccgattaaataaaacactttgtcAAGCAAGCTGATGTGATGCAGGGAGATTgcatctttttattatattgaccACTATTACATCTTTTAACAGTAAAAGCTGTAGAATGTGTTAACTTATGATTAGAATAGATGCATGCAAATAGCTTgagcataaaataatacaattaattaatgcattattatggaGACTTTATATTCACAAGTATGGTGTGATGACTAAATTACAGATGCATTATTACATTGTATGATATCTATAATGCTGTCAGTCATCACTCACTGAGTCGGACatgtaacaaaataaagtgaagtGACTTATGACTGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53675 lncRNA upstream 252549 14046777 ~ 14047494 (+) True G36420
TU53657 lncRNA upstream 292641 14005771 ~ 14007402 (+) True G36408
TU53655 lncRNA upstream 296512 14000526 ~ 14003531 (+) True G36406
TU53654 lncRNA upstream 299706 13999100 ~ 14000337 (+) True G36405
TU53521 lncRNA upstream 325284 13974532 ~ 13974759 (+) True G36332
TU53795 lncRNA downstream 16252 14321556 ~ 14322681 (+) False G36503
TU53796 lncRNA downstream 19047 14324351 ~ 14326754 (+) True G36503
TU53787 lncRNA downstream 27764 14333068 ~ 14335183 (+) False LOC122345214
TU53790 lncRNA downstream 27764 14333068 ~ 14337765 (+) True LOC122345214
TU53801 lncRNA downstream 36619 14341923 ~ 14342507 (+) True G36507
XM_043238381.1 mRNA upstream 12603 14283080 ~ 14287440 (+) True si:ch211-271e10.2
XM_043238374.1 mRNA upstream 19754 14276095 ~ 14280289 (+) False mogat3b
XM_043238375.1 mRNA upstream 19754 14276096 ~ 14280289 (+) False mogat3b
XM_043238373.1 mRNA upstream 19754 14276615 ~ 14280289 (+) True mogat3b
XM_043238376.1 mRNA upstream 74047 14221600 ~ 14225996 (+) True gltpd2b
XM_043238981.1 mRNA downstream 1533 14306837 ~ 14310076 (+) True LOC122345145
XM_043238979.1 mRNA downstream 6340 14311644 ~ 14314601 (+) True LOC122345143
XM_043238980.1 mRNA downstream 10395 14315699 ~ 14320923 (+) True LOC122345144
XM_043240101.1 mRNA downstream 16224 14321528 ~ 14322697 (+) True cxcl11.8
XM_043240102.1 mRNA downstream 16228 14321532 ~ 14322697 (+) False cxcl11.8
TU53776 other upstream 7543 14290420 ~ 14292500 (+) True G36495
TU53623 other upstream 314337 13984097 ~ 13985706 (+) True ins
XR_006251084.1 other upstream 1492827 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 1594802 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 1783935 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU54000 other downstream 342185 14647489 ~ 14651911 (+) False fgf5
TU54012 other downstream 413228 14718532 ~ 14720487 (+) True G36640
TU54916 other downstream 2178698 16484002 ~ 16560732 (+) False G37227
TU54918 other downstream 2178698 16484002 ~ 16560732 (+) True G37227
TU54920 other downstream 2181316 16486620 ~ 16561741 (+) True G37228

Expression Profile