RNA id: XM_043240139.1


Basic Information

Item Value
RNA id XM_043240139.1
length 4992
RNA type mRNA
GC content 0.49
exon number 26
gene id sgsm1a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5920574 ~ 5954193 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGAGTTTGACATCTCCACGTCTCCGGGAACCTCTCTGGCGGGTCACGTGATCTCGCGGTAGCAGGGAGCGCTTTTAAACGGCTCTGGCTTCATCCAGTCGAGAGAAGCGGAGAGCGCCAGAGCTCAACACCGCGATCATGGCAACAGCAGAAGCCGAAACCCGCCAAAGACTGCTGCGAAACGTGAAGAAGGAGGTCAAGCAGATCATGGAGGAAGCGGTCACAAGGAAGTTTGTTCATGAAGACAGCAGCCATATTGTCTCATTCTGTGCTGCTGTCGAAGCCTGTGTGCTTCACGGGTTGAAGCGGAGAGCTGCCGGTTTCCTACGAAGCAACAAGATAGCTGCGCTCTTCACCAAAGTGGGCAAAAGCTTCCCTCCAGCTGAAGAGCTGTGCAGAAAAGCCCAGGAGCTGGAACTGGTCTTTGAGAGCAAACGAAGTCAGTCTCTCTCATACAGCGAAAGCAGCCGAAAGATGCCCAAAGTCCCAAACTTCTCACCTCAGGCCGTCAGACATGTATGGATCCACACTGCCCTCATTGAGAAAGTGCTAGACAAGATCGTGCTGTACCTTGTGGAAAACAGCAGTAAGTTTTATGAGAAGGAGGCTATCCTAATGGACCCTGTGGACGGCCCTATCCTCGCCTCTTTGTTAGTGGGCCCGTGTGCATTGGAGTATACCAAAATGAAGACGGCAGATCATTTCTGGACAGATCCCTCAGCTGACGAGTTGGTGCAAAGGCACCGTATTCACAGTGGCCATTGCCGACAAGACTCTCCCACAAAGAGACCTGCCCTCTGTATTCAGAAAAGACACTCCAGTAGTAGTATGGATGAAAGGCCATCTCCCTCCCCCTCAGCCAGAGACTATGTGGAGTCTCTTCATCAGAATTCCAGAGCGACTCTCCTGTTCGGCAAAAACAACGTACTGGTGCAGCCgAGGGATGATATGGAAGCAATCCCAGGGTACCTCTCTCTGCACCAGACGGCCGACTGCATGACTCTGAAATGGACGCCAAATCAGCTAATGAACGGCTCCATGGGAGATCTCGACTATGAGAAGAGTGTTTACTGGGACTATGCCATGACAATCCGCCTTGAGGAGATTGTGTACTTGCACTGTCATCAGCAGGTGGACTGTGGGGGAACAGTGGTTCTGGTCAGTCAGGATGGGATTCAAAGGCCTCCACTTCGTTTTCCTCGTGGTGGTCACCTCCTACAGTTCCTCTCCTGTCTGGAAAATGGTCTGCTGCCTCACGGTCAGTTAGACCCGCCGCTGTGGTCCCAGAGAGGAAAGGGTAAAGTATTTCCCAAGCTGAAGAAGAGATGTCCACAGGGATCCTCGGACTCCGTCTCAGacaaagaagaggaagaagcaACAGATTATGTCTTCCGCATTGTTTTCCCACACAGCCAGTCAGAATTTGTGGCACCGGAATTGATAGATCAGGGAGCAAACATGTGGCACCCAACTCCAAGGAAATCGTCTTGCTCTTCCTGTTCACAGAGTAGTTTTTCTGATGGAGCTCCGCCCAATGGATGCAATCATGAAAGGGCCCCACTGAAGTTGCTGTGTGACAACATGAAGAACCAAATCATCTCTCGGGCTTTCTATGGATGGCTGGCGTACTGCCGTCACCTGTCCACGGTACGCACTCACCTGTCTGGCCTCGTCAATCACTCTATTGTGGAGCCAGATGTGCCCAGTGACGCCTACAGAGGCCTCACCACAGAAGTGTGGCAGACGTTTCTTCAAGACTGCAGCACCTATGAGGAGAAAGAGTTACTGCGGCTAGTTTATTTCGGTGGAGTTGAGCCTTCATTGCGAAAAGAGGTCTGGCCTTTCCTGCTCGGCCATTACCAGTTTGGGATGTCTGAGGCTGAGAGAAAAGAGGTGGATGAGCAGATGCGCGCGTGCTACGAGCAGACAATGAGCGAATGGCTGGGGTGTGAGGCCATTGTTaggcagagagaaaaagaacagcatgCTGTGGCATTAGCCAAGTGCTCGTCTGGGGCGAGTATAGACAGCACCACACAGAGGATAATGCACCGTGACTCCACCATCAGTAATGAGTCTTCGCAGAGCTGTAGTTCAGGCAGGCAAAGAGATTCCAGGCTGCAGAGCGACTCCAGCAGCAGTACTCAATTCTTCACTTCCCTAAACCCCTTCCCCTGGAGTAGCTTTTTTccgtttgtcttgtttttccagGTGTTTGAGTCTGTTGAAGAGGTCGACCAGATCGAGTCCGAGCCCAAGAGTGAAGATACCAAACAGGTTTCCAAAATCACAAACGGAACACCGCAAAATGGCACAAGTTCTCCAGACTCCGGTCTGCCCTCTTCCAGAAACTTCTCCGTTACTTCTGGTCAGTCAGACTCCTTGAGCACAGAGGAGAGTGCCATACATGATCCAAGCCTTAAAGCTCAACCACAGCTAGCAGTATCAAAGGAGAGGTTTGCGAGTTCATCTGGAGAGGAAGGAAAGGTGACTGAGGAAGGTGAGTCCATATCGATTGAGAAACTAGGTGTGAGAGAATATAGTAGGATTGAGGTTAGCAAAGTGTTGTCTTTGGATGCAGTCGTGGCAATAACAGAGGGAAGCAAGAAGACCACAGAGAACCAGCGGTCAGAGGTCGAGACTGAGGGGTTGAAAATGGCTAGAGATGCCTCCGAGGCTCCTGAAGCAGCTCGCAGCAGCATGACCAAAATGGAAGTGGGCGAATCTCCAGAGAGGACTTTGACATCAGAAAATGAAACACTGACAGGGCGCACTGAGTCTGAAATTCCCCGAGTGACAGAGGTCGAGGAATCGACTCCTCCGGAGCAGAAGATGAATGAGAATCGGCATGATGATACAGAGAAGGAAACCAGTGAAATAATCAAAGACTCCAAGACATGCAAGGATGATGATCGTGGCACACAAAGAGCTTTAAAACCGAGTGATGAGAACGAGAACAAGACTATGAAGACCAGTGATTTACTCAGTGGAGCTGGAACGATAGTAAAGAGGAAAGCAACATCGGTTCTCCCCAAATCCACTGATACAGAGCAAAGAGAAGGAAAGGATGATTCAAAGAGAAGCACGCATATAGAAATGCAGAGGAACGCTCCAGTAATTGAGGAGACTGTGGTCCCATTGGTGCATGAAGCTTTTAGCACACGAGAGATGGGTGAAGCCCAAGACGCAACTGAGTCGGACGAGTCTCCTTCTGCAATTGAAATGGAGGAGATTCCTACAGCTAAAGTGTCCATGGCTTGGGAAAGGAAGAGTTCCCCCAGAAGCAAGGCTAATGAGCAGGCAGCTGTACCTGTACTGGAGCTCAGGCTGGAGGAAGCTCGAGGAAAGCCCGGCTCTGACGAAATGGACTCTGAGGAGCCGGAGATGGAGAGTCTTTGCCCACAGCTGGACTCGCTGGCTGTAAACGCTGAGAAAAATGAAGCTACATCTCCAGTTTCCTCTATAGGCACCACTTATTCTCAAGAGCTATTGGACCTGTACACTCTAAATCTGCATCGCATTGATAAAGACGTTCAGCGCTGTGACCGAAATTACTGGTACTTCACTCCTGCTAACTTGGAGAAACTGCGCAACATCATGTGCAGTTATATCTGGCAGCACCTGGAAATTGGATATGTCCAGGGCATGTGTGACCTGCTCGCTCCCTTGCTGGTTATTCTAGATGACGAGGCCATGGCTTTCAGTTGCTTCACTGAACTAATGAAAAGGATGAATCAAAATTTTCCTCACGGAGGTGCGATGGACACACACTTCGCCAACATGAGATCTCTCATCCAGATTCTAGACGCAGAGCTGTTTGAGCTGATGCATCAGAACGGAGACTACACGCACTTCTACTTCTGCTATCGCTGGTTTCTTCTTGACTTTAAACGAGAGTTGGTGTATGATGATGTGTTTGCTGTTTGGGAGGTCATCTGGGCCGCTAAGTGCGTCTCCTCCAGCCACTTTGTGCTCTTCATTGCTCTTGCATTGGTGGAGATATACAGAGACATCATTCTAGAAAACAATATGGACTTCACagacatcatcaagtttttcaacgAAATGGCCGAGCATCACAATATCAAGCAAATTCTGACTCTGGCTCGAGACCTGGTGTGCAAAGTGCAGACGCTTATAGAGAACAAGTAACGCTGCGACCTCTCACCTCTGTCGTGTTCGCGGTGTAACCCGTCAGCCCTCGCTACAAGACAATAGACAACATTTGGCCAAAGCTTAATGAGCTTCAAGCATACGGTAACGTTTTAAAAAGCCAAACTTCTTGATCTGCCTGGCAATCGGTCAGTGTGCAATTTTTAAGAGTCGTCTGGCTCTTTAATCAGGTTTTACTGAACATTATAGCGCATACGATTTTATAAGCAGATGCTGCTAATGAGTGGTCATTCCCTGTTTGACACGGCAGTCAGGATTACCAGTCGCTAGTGACTCACAGGCtccgttccaaaacctagtgagctgtctTGCTGTCTAATGCCTACAGAAACTGAAACTGAACATCAGACGTGACTGGTTAGCTTCCAGTTTGATTTGACGTCGACACCcaaacacacagaacacgcGCAAAGCCTGTATAAATCAGATTCCAACTTTTATTGATGCTTGTCGGTGAAAACAAGCGTTTATAAACGTTTTCTTGATTCGTGTGATGcgatttgacaaaaaaaacatcgtAGAAAGCGGCAGGATGTTGCAGAAGTGTGCCTGTGATGCCTTAAAAAATGCTGCCTATGTAGGcggctcactaggttttgaacTAGAACAATAGTTGAGGAGTTCAGGTCAGGTGCGTTTTACTGCTAAAAGAGGTGCTCACACTAGATTTCGTGCTCCATTTGCTTTCACTTATAGAGAGGGCACTTCCGTACATTGCCGTTCAAACGTTTGGGATTTTTTGGTTTGTTCGATTTTTACGGTTTTTACGCACACCAAGGCggatttgatcaaaagtacagtaataaCAGTACTGctata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49303 lncRNA upstream 23208 5863332 ~ 5897366 (+) True G33471
TU49270 lncRNA upstream 40045 5859290 ~ 5880529 (+) False G33453
TU49281 lncRNA upstream 50064 5817420 ~ 5870510 (+) True G33454
TU49269 lncRNA upstream 59677 5859290 ~ 5860897 (+) True G33453
TU49099 lncRNA upstream 381176 5526849 ~ 5539398 (+) False G33348
TU49349 lncRNA downstream 124890 6079083 ~ 6079423 (+) True G33492
TU49363 lncRNA downstream 171137 6125330 ~ 6165323 (+) True G33499
TU49366 lncRNA downstream 211212 6165405 ~ 6165623 (+) True G33500
TU49367 lncRNA downstream 212222 6166415 ~ 6166704 (+) True G33501
TU49368 lncRNA downstream 212541 6166734 ~ 6167250 (+) True G33502
XM_043240905.1 mRNA upstream 26174 5884921 ~ 5894400 (+) True ankrd13a
XM_043240906.1 mRNA upstream 62897 5851966 ~ 5857677 (+) True LOC122346201
XM_043239993.1 mRNA upstream 115620 5748118 ~ 5804954 (+) True fam222a
XM_043240140.1 mRNA downstream 2233 5956426 ~ 5958413 (+) True gatc
XM_043240419.1 mRNA downstream 5639 5959832 ~ 5982816 (+) True tnpo1
XM_043240410.1 mRNA downstream 28955 5983148 ~ 6019840 (+) True fcho2
XM_043240413.1 mRNA downstream 28955 5983148 ~ 6019840 (+) False fcho2
XM_043240411.1 mRNA downstream 28955 5983148 ~ 6019840 (+) False fcho2
TU49128 other upstream 270689 5604333 ~ 5649885 (+) False G33355
TU49131 other upstream 270689 5604333 ~ 5649885 (+) True G33355
XR_006250955.1 other upstream 273149 5625267 ~ 5647425 (+) False myo1ha
TU48849 other upstream 1297514 4622507 ~ 4623060 (+) True G33174
TU48610 other upstream 1776178 3605186 ~ 4144396 (+) False G33015
XR_006251052.1 other downstream 5642 5959835 ~ 5978584 (+) False tnpo1
TU49351 other downstream 133069 6087262 ~ 6088562 (+) True G33494
XR_006250986.1 other downstream 293602 6247795 ~ 6254646 (+) False hexb
TU49600 other downstream 519154 6473347 ~ 6474191 (+) True G33664
XR_006251060.1 other downstream 839172 6793365 ~ 6824304 (+) False si:dkey-34e4.1

Expression Profile