RNA id: TU80660


Basic Information

Item Value
RNA id TU80660
length 458
lncRNA type read_through
GC content 0.36
exon number 2
gene id G54363
representative True

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 19112632 ~ 19462589 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGGAGGCTGCTTTGAAACAAGGCTTTCAAGAACAGACATAGTGTTCCAAGTCTCTCTTTTCCCTTTTTGAAAATTGTAGCACTGAGCGCTAACTCTACATCAAGATTTGCACACATCCCCATGGTAGCAGTGATTAATAATATTCCCAGTTCCCTTCTATACCCACTCAATTTTATACAAATCTAGACtgaaggtgaaaaaaaacaaaacggtaTCAAAAGGCATTTCTTCGGGAAGAAGAAGGCATGAAACTACCACCTCAAAGCATTTCTTTAGTCACATCATCtttctaaactaaaaaaaaaatagacaaaagcTCCATGGTACTCCATAAAGCACAATACAAAAACTAAAGTTTCAgataaaaataacccaaactTTAAAGACTTTGGTACAGTATAAATTAAAACGTAGCTCTCTGCTTCAATCACGCTAACATCCATGCTAACATGTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251375.1 lncRNA downstream 303363 18807796 ~ 18809269 (-) True LOC122348823
TU80554 lncRNA downstream 328924 18742160 ~ 18783708 (-) True G54312
TU80723 lncRNA upstream 87098 19549687 ~ 19549902 (-) True G54414
TU80724 lncRNA upstream 87849 19550438 ~ 19550650 (-) True G54415
TU80976 lncRNA upstream 252353 19714942 ~ 19715178 (-) False skor1a
TU81041 lncRNA upstream 509692 19972281 ~ 19972723 (-) True G54632
TU81042 lncRNA upstream 510672 19973261 ~ 19973577 (-) False tex9
XM_043243507.1 mRNA downstream 46360 19062394 ~ 19066272 (-) False LOC122348212
XM_043243503.1 mRNA downstream 47929 19062394 ~ 19064703 (-) False LOC122348212
XM_043243500.1 mRNA downstream 47953 19062394 ~ 19064679 (-) False LOC122348212
XM_043243504.1 mRNA downstream 47957 19062394 ~ 19064675 (-) False LOC122348212
XM_043243506.1 mRNA downstream 48032 19062394 ~ 19064600 (-) False LOC122348212
XM_043243985.1 mRNA upstream 89531 19552120 ~ 19578075 (-) False tle3b
XM_043244000.1 mRNA upstream 89531 19552120 ~ 19578074 (-) False tle3b
XM_043243999.1 mRNA upstream 89531 19552120 ~ 19578074 (-) False tle3b
XM_043243998.1 mRNA upstream 89531 19552120 ~ 19578074 (-) False tle3b
XM_043243997.1 mRNA upstream 89531 19552120 ~ 19578074 (-) False tle3b
TU80624 other downstream 197711 18913255 ~ 18914921 (-) False LOC122348206
TU80606 other downstream 239492 18846276 ~ 18873140 (-) True G54330
TU80561 other downstream 318425 18788232 ~ 18794207 (-) False G54312
TU80535 other downstream 442889 18667706 ~ 18669743 (-) False LOC122349446
TU79785 other downstream 2227108 16881893 ~ 16885524 (-) False G53797
XR_006251373.1 other upstream 272716 19735305 ~ 19769405 (-) False map2k5
TU81046 other upstream 532473 19995062 ~ 20001646 (-) True G54637
TU81111 other upstream 816263 20278852 ~ 20280806 (-) False G54687
TU81333 other upstream 1602344 21064933 ~ 21068375 (-) True G54872
TU81735 other upstream 2590207 22052796 ~ 22056245 (-) True G55165

Expression Profile