RNA id: XM_043243699.1


Basic Information

Item Value
RNA id XM_043243699.1
length 1692
RNA type mRNA
GC content 0.46
exon number 8
gene id ecsit
representative False

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 12144440 ~ 12158250 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAACGTTTCTGGGGGGAAGTTAAAAGACGATGGACCAGGAAACCAGCCGGTGCGTGTTTGAAGGAGACCTGATTATTTCTCttgaGCTGATTTTAACACATTTGTAATCCATCTGATGTGGTTAGTAATGTCATAATCATGAATGCTCCTCGTCATCTGTTTCGGATCCAGTGTATTGGGTGCGTTGCAGGGTTTTTGAGAACTCCTGTACAGCGTGTGATACTACCTGGTGGAGCACATCTGCAAACCCCTGGATCACAGCACAGCCATGGCCAGCTTCAGAGGCCATTCCACTGCAGTTCAGTATGCTCCACGAGCCGTCCAAGCCAGACACCTGAAGATAAGACACTTAATAAAGACACAAGTTTAGTCACACATGATGATTTATTTGAGCGAGCTGCTAGCGACTCAAAGAGCAAAGCTGATTTTAATAGAGTCGTGGATGTTTTCAGCCAGAAGGACATTCGACGAAGAGGCCATGTGGAGTTTATTTATGCTGCTCTAAAGAAGATGCCAGAATTTGGAGTAGAACGAGACATTACTGTTTACAACAAACTCTTAGATGTGTTTCCAAAAGAGGTGTTTGTGCCACGGAACTTCATTCAGAGGATGTTCAACCACTACCCACGACAGCAAGAGTGTGGAATACAGCTGCTGGAGCAGATGGAGAACtatgGTATCACGCCGAATGTAGAGACCAAGGTTTTACTGGCTCAGATATTTGGAGAAAAGAGTCATCCTATGAGAAAGTTTCAGCGTATCATGTACTGGTTTCCCAAGTTCAAGCACGCAAACCCTTTCCCCGTCCCACATGTGCTCACCAGTGACCCAGTAGAGCTCGCTCGATTCAGTCTTACCCGGATTGCAGATGACCTGAGTGCTAAAATAACAATCTATCAGTATCCATCAACAGATATGACAGAGACTGGTGAAGTTATGCGTCCCCATATTGTTGGTATTCAAAGCCCAGACCAGCGCTCCCTTCTGGCCAAACACAATCCCTGCAATCCTGTGTTTGTGGAAGGCCCATTTCCACTATGGCTCAGAAAGACCTGTGTTCATTATTACATACTCAGGGCAGACCTTATACCGTCTGAGGAAAAGGTTGAGGAAGAGTTTGACCCTGAGATGATTGGTCCAGAGCAGAGTGTCTTCTATCCTCAGCGAGTGGACCTCGACCTGGAAAGAGACATGGGTGATGATTTCAGTTTCAATGTGGATGATGTGGAAGAGGGGCCGGTTTACGCCATGTGTATGACCGGTCAGGGAGACGAGGCTACCCTGTCTAAGTGGATTTCTGGTCTACAGGAGACCTGTCCCATACTGGGCCAGATCCCTACAGTGTTCCGGCTGGCTTCTGGACCCAGAGAACTGCAGACCTCGTCGGATACTCAGCGAACCCCCAAGCAGGAggctgaaaatgaacaaattattgAGGAGGAGCCGCTACAATCACAAAGAATGAAACAGTGAGAGCCATGCCAATGGATGTGTGTTTCACGAAGGCAACTGTGGTAGTTTTACATTAATTTGAtgaactttatatttaatttagttaacaGATACTGGTTCATGTCTTACCTATTACACACTGCTTTTCAGTTGAGATCTGTCTACAGTATGAAGAGTTGCTCTGTGTGTAAATATGTTATGAACTCATTTGGCagtgcaataaaacaaacatttctctga

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0051341 regulation of oxidoreductase activity biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77402 lncRNA downstream 398 12143315 ~ 12144042 (-) True G52245
TU77407 lncRNA downstream 3105 12134931 ~ 12141335 (-) True G52246
TU77373 lncRNA downstream 15807 12122880 ~ 12128633 (-) False zfta
TU77264 lncRNA downstream 121109 11998207 ~ 12023331 (-) True G52166
TU77258 lncRNA downstream 125398 11986052 ~ 12019042 (-) True G52163
XR_006251309.1 lncRNA upstream 32043 12179541 ~ 12181562 (-) False LOC122348338
TU77392 lncRNA upstream 32620 12180118 ~ 12184955 (-) True LOC122348338
TU77452 lncRNA upstream 63888 12211386 ~ 12212162 (-) True G52268
XR_006251362.1 lncRNA upstream 75799 12223297 ~ 12224810 (-) True LOC122348702
TU77431 lncRNA upstream 99379 12246877 ~ 12250832 (-) True G52255
XM_043243694.1 mRNA downstream 8501 12127353 ~ 12135939 (-) True zfta
XM_043245798.1 mRNA downstream 36821 12101771 ~ 12107619 (-) True men1
XM_043245433.1 mRNA downstream 43210 12085958 ~ 12101230 (-) True map4k2
XM_043245434.1 mRNA downstream 46617 12085958 ~ 12097823 (-) False map4k2
XM_043243594.1 mRNA downstream 72787 12069584 ~ 12071653 (-) True LOC122348280
XM_043243697.1 mRNA upstream 4975 12152473 ~ 12158287 (-) False LOC122348336
XM_043243695.1 mRNA upstream 4975 12152473 ~ 12158287 (-) True LOC122348336
XM_043245314.1 mRNA upstream 125451 12272949 ~ 12289393 (-) True peli3
XM_043243614.1 mRNA upstream 216099 12363597 ~ 12373702 (-) True sstr1b
XM_043245784.1 mRNA upstream 234475 12381973 ~ 12387908 (-) True znf16l
TU77279 other downstream 115741 12028050 ~ 12028699 (-) True G52172
unassigned_transcript_1282 other downstream 213053 11929463 ~ 11931387 (-) True LOC122347839
XR_006251333.1 other downstream 343543 11793695 ~ 11800897 (-) False LOC122348489
TU77005 other downstream 890191 11252230 ~ 11254249 (-) True G51969
unassigned_transcript_1279 other downstream 1285065 10859303 ~ 10859375 (-) True trnar-ucg_116
TU77538 other upstream 216823 12364321 ~ 12373708 (-) False sstr1b
unassigned_transcript_1283 other upstream 295182 12442680 ~ 12442751 (-) True trnaa-cgc_56
TU77682 other upstream 486382 12633880 ~ 12638870 (-) True fcer1g
unassigned_transcript_1284 other upstream 535660 12683158 ~ 12683231 (-) True trnar-ucu_9
TU77750 other upstream 622834 12770332 ~ 12772437 (-) True G52473

Expression Profile