RNA id: TU77750


Basic Information

Item Value
RNA id TU77750
length 1798
RNA type TUCP
GC content 0.42
exon number 4
gene id G52473
representative True

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 12770332 ~ 12772437 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAATATATAGGCAGTGGTGGGCAGGAGGACCGCTGATGTTTTAGCTTTTGCCATTGCAGCAATTCCATCATCTGTCACTTCTTCTAAATGGCTGATGGCTAAAGCGCCGAGCTCTGCCCCAAGCTGTAAGTCAGGCGGACAAGGAACGTGAATGTGCCGAGTTCATGGGATGGAGTTCGTCGCCGTGAAAGTTGATGTTGAGGCCCATATCTTTGCCAGCCTTGAGTATGCAACGTGTCGAATTCAGATCAAACACACCTTTCTCGCAAAATGCATCAATGTTGTCCACCTGCAGTTCGCCTGAAGCAATCTGCGTTTTTATCCTGGGCAACTGCACTGCCACAATGTCCTGAGTGGCTTCCTCCATAGTTTTACCTCTGAGGAAATGGATGTTAAACAAATTAAGAGTTGTTTAGATTTAGGGTTGCTCactaggctgcatttatttaatttaaaatacaccCCAAAAAATATATGGTGTTTGTTATAAAGACTGTGTACTTGGGTACTGCATGGGCTCCGCAGTATGTTGCTGATATCCCAATGGGGAGTGAGATTCTGGCTGCATCGATCACCCTCAGCATCTTGAGTTCAGTGTCCAGCTCAAGCCCATATCCGCTCTTACACTCCACCAGCGTGGTTCCAGCTCTCATCATGCGCTCCAGACGGCTCTTTAACCCATCTAACAGTTGGCGTTCGGTTGCCGAGCGAGTATGTGTCACCGTGAAATGGATTCCACCTCCTGCTTCGTGCACTTCCATGTATGTGGCACCGGCCCATactggatgtgtgtgtgcgtcgaCCAGGCCTGAAACATTATGTTAAGAttctttcagctttttttttatttttaaaggaatcgtCAACAGAAATGCTGGATGTAACATTTACCAGGGATGACACACATGCCAGAAGCATCCAGAATATTGTCAAACTTTGCTCCTTTGAACTGAGACTCAATGATGTCTGCTGGTCCAACAGCTTTAATTAGTCcatcactacacacacacacacacacacaatgaggaCAGCCCATATACTTACAGTAAACTGCCcttttattcacttatttataaTCACTGTAGGCTAGCCAAAATGAACCTAAAATGTTTCCCccaaatgacatttttctattttctgaGTATAATTTTGTTccaatatataattaattaaaagcgAACTGCTTATTTTACTGCTTAACTGATGTAAAACATATACCCCTTGTGTCACAGACAAGGTATAAATCTAGTTTAAGGCTAACATGTACGTCTGAGCtgttttaacaaaaagaaagttGCACTGGCTGAtcttaaaatttgttttgtctcaccatacacaccagtaatgcttttttttctaaggcacatttattaaaaaaaaactgtaattgaACAATAGCCTAATCTTCTCGTAGTCTAAGCCCtatctgtgaaaccaggccaaGGTAGCCatgaaaaaatttATTAAAATTGTTAACAAAgacacattaaacattacatgttAGATAACTCATCGCAACAAATAAGCAAAAGTCTTACTGTCCAATCAGCACACTGCCATTCTCAACGACGGCCAGCGTCTGCATCCCATCTCTGGTGAGGTACTTTTCACCATTCCTACAAACTAACACCACTTGCGTTGCATTCTTGATTAAAAGCCTGAAACTGCTCGgagacatttttagattaactTCGACACAAGCGATTCAGAGCAGAGCTCAGAGGCGAAGGAGTGGGTAAATATTTAGCAAAGCCAAAATTGGGTAACTGGACGAAGGTCAGAAAGGCGACAAGTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77752 lncRNA downstream 499 12769452 ~ 12769833 (-) True G52475
TU77753 lncRNA downstream 499 12769452 ~ 12769833 (-) False G52475
XR_006251285.1 lncRNA downstream 172758 12596958 ~ 12597574 (-) True LOC122348240
TU77508 lncRNA downstream 469111 12301001 ~ 12301221 (-) True G52295
TU77507 lncRNA downstream 470226 12299817 ~ 12300106 (-) True G52294
TU77762 lncRNA upstream 31565 12804002 ~ 12804373 (-) False G52481
TU77764 lncRNA upstream 31565 12804002 ~ 12804373 (-) True G52481
TU77760 lncRNA upstream 32061 12804498 ~ 12807491 (-) True G52480
TU77777 lncRNA upstream 36017 12808454 ~ 12808901 (-) True G52490
TU77804 lncRNA upstream 86599 12859036 ~ 12867190 (-) True G52502
XM_043243832.1 mRNA downstream 3857 12755773 ~ 12766475 (-) True ntn4
XM_043243831.1 mRNA downstream 14703 12693952 ~ 12755629 (-) True dock11
XM_043244988.1 mRNA downstream 79044 12684137 ~ 12691288 (-) True il13ra1
XM_043244989.1 mRNA downstream 79045 12684137 ~ 12691287 (-) False il13ra1
XM_043245735.1 mRNA downstream 89650 12648829 ~ 12680682 (-) False kirrel1a
XM_043245371.1 mRNA upstream 1263 12773700 ~ 12779805 (-) True si:ch73-71d17.2
XM_043245360.1 mRNA upstream 39359 12811796 ~ 12818804 (-) True man2b2
XM_043245362.1 mRNA upstream 51593 12824030 ~ 12826331 (-) True LOC122349348
XM_043243158.1 mRNA upstream 189940 12962377 ~ 12963430 (-) True LOC122347901
XM_043244518.1 mRNA upstream 191687 12964124 ~ 12964964 (-) True LOC122348718
unassigned_transcript_1284 other downstream 87101 12683158 ~ 12683231 (-) True trnar-ucu_9
TU77682 other downstream 131462 12633880 ~ 12638870 (-) True fcer1g
unassigned_transcript_1283 other downstream 327581 12442680 ~ 12442751 (-) True trnaa-cgc_56
TU77538 other downstream 396624 12364321 ~ 12373708 (-) False sstr1b
TU77279 other downstream 741633 12028050 ~ 12028699 (-) True G52172
TU77828 other upstream 189940 12962377 ~ 12964067 (-) False LOC122347901
TU77932 other upstream 191887 12964324 ~ 12964926 (-) False LOC122348718
TU77936 other upstream 204510 12976947 ~ 12981796 (-) False LOC122347902
unassigned_transcript_1285 other upstream 528500 13300937 ~ 13301030 (-) True trnai-uau
unassigned_transcript_1286 other upstream 529404 13301841 ~ 13301934 (-) True trnai-uau_1

Expression Profile