RNA id: XM_043246276.1


Basic Information

Item Value
RNA id XM_043246276.1
length 1086
RNA type mRNA
GC content 0.49
exon number 6
gene id prxl2c
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 534683 ~ 537150 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGCTTAACTTTTCGGCGAAAAGAGTTGAAATGGACGCAAAGGAGCAGAGATGAAGCCCCGAGTCCCTGTTCGTGGGCGGATTGGTTCCAGCAGGAATGGGCGTAAACGTCCTAAAATAACCCTGCCTCGGAAAAGTGAACGCGATGGCCGCCGTTCTCCCGATAACGCGACAGATCGCTCGCTCCGTTCCCGAGCTCCGACGAGCTTCCCACGACCTCTGCCTCTCTGACATCAACGACTGTCTGATATTCGATCGCCACGGTGTCTGTAAACCCTTCAGCAGCTTGTTTCAACGCAACAAGGCGATCGTTATATTCGTGAGGAACTTCTTGTGCTACGCCTGCAAAGAATACGTGGAGGATCTGGGCAAAGTACCTGCGCAGCTGCTGCAGGACTCGAATGCCAGGCTGGTGGTGATTGGACAGTCGTCCTGGTGTCACATAGAGGCCTTCTGCTCCCTGACAGGCTACTCTCACGAAATATATGTCGATCCGGAGAGACGGATTTACAAAAAGCTTGGAATGAGAAGAGGAGAGACGTACATGGAGACACCTTCCAGCAGTCCCCATGTGAAGTCCGGCCTGCTCGTGGGGAGCCTGAGGAGCACGTGGCGCGCCATGACCAGCCCTGTGTTTGACTTCCAGGGAGATCCCCTGCAGCAAGGAGGAGCTCTGATCGTAGGCCCAGGTCCGGAGGTTCATTTCGCCCACTTTGACATGAACCGGCTGGACCACACGCCCATCAACCGGTTGCTTCAGTCGGCGGGCCTCCAGACGCTGGACTTCAGCGATTCGCCCAAAATCATGGACGTCTGAAGGAAAGAGCAGCCGATGCTTGTAGCTGTAATAATGCAATGCTGGTCTTTGTTTGAACTCTATAATGGCTCAATATTGCTTTTGTATatagtgttgtttttatataatatttatgtttgatAGGAACAAGCCATTCCACTCTTAGGGCCCTtgattatgtattattttacacccattgcataataaatacatacgtgtaaatatacaatatatatgtgtgtatataacaaaaatacattatcacacggagtaaaaacagtaaaaacttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88200 lncRNA upstream 272103 159691 ~ 262580 (+) False G59656
TU88201 lncRNA upstream 272103 196796 ~ 262580 (+) False G59656
TU88211 lncRNA upstream 298025 223973 ~ 236658 (+) True G59662
TU88210 lncRNA upstream 298025 236073 ~ 236658 (+) False G59662
TU88199 lncRNA upstream 335526 196796 ~ 199157 (+) True G59656
TU88294 lncRNA downstream 25710 562860 ~ 565830 (+) True G59735
TU88295 lncRNA downstream 25808 562958 ~ 565830 (+) False G59735
TU88337 lncRNA downstream 30145 567295 ~ 644568 (+) True G59756
XR_006251597.1 lncRNA downstream 62561 599711 ~ 608007 (+) True LOC122350371
TU88345 lncRNA downstream 89699 626849 ~ 727005 (+) True G59762
XM_043247432.1 mRNA downstream 625 537775 ~ 550687 (+) True cdc14b
XM_043247973.1 mRNA downstream 15923 553073 ~ 557380 (+) True znf367
XM_043246777.1 mRNA downstream 76394 613544 ~ 628517 (+) True smyd1b
XM_043246778.1 mRNA downstream 76402 613552 ~ 628517 (+) False smyd1b
XM_043247688.1 mRNA downstream 98273 635423 ~ 648303 (+) False znf366
TU88285 other downstream 644 537794 ~ 540066 (+) False cdc14b
TU88286 other downstream 1409 538559 ~ 540066 (+) False cdc14b
TU88420 other downstream 266503 803653 ~ 804839 (+) True G59807
XR_006251599.1 other downstream 304927 842077 ~ 852004 (+) True znf608
TU89150 other downstream 1378310 1915460 ~ 1918371 (+) True G60259

Expression Profile