LOC122350371


Basic Information

Item Value
gene id LOC122350371
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 599711 ~ 608007 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251597.1
ttctttcttccaatTAACTTCCCATCAGAAGGTAGAGAAGATGTTTTctagaagacaaaaaaagttaaatttacCCTGATCTTTATACAGTTTTCACCCCCGGGATCTTACAGTTTTCCCTCACTTGCTAAAACACACTTTCTGAAACCTTGCTCCGGTTTCCGACACCGTTAAACAAAACCTCAAGCGCTGTTTACAAAACCTCTGACTCGTCTCGTAAAACGAAACCGTCGCCTCGAAACAGTTTCACCCGTGTTCAAAATCGAGCACCGATCTCAAATCATAAACAAAGTGATCAAAATGATACGCACTGCCAAGCAGCCAGTGAACAACACGCAGAAAAACAGGAAACACATTGTTCACAACATAGTTCTCAGGGATAGATCCTAGCAGCTCAGCGGTTGTGTTCAGTCCATCACGTGTTCTCTGTTTGTGATTGATTGCCGTCACTTGTGTTTATCAGTATGGATGACGTTCAGAACGTGTTTGGAGAATGAGGAGGTGTTTAGAGTTTTGCCGAAACGTCTAAGAGAGATGTGACGTGGTTTGAGGTTTTGATAACAGACTGCACAGACGAGGTCGGCCGATGGGTTTTAGTGTTTCAGCAAGTCAGAAAAACTGTAAGGCGTCATTCTACGAATAAATGCATATTGCGTGTGCATCGTTATTAGACCAAAAAATGCTTTCTACAAAATAACCAGAAATtattcttaagcagcaaatgattctgatttctgaaggatcacgtgatggtgctgaaaattcagatttgatcgtggaaataaattatatttgaacacATATTCAAACTGGAAACAGCTATTcgaaactgtaataatatttcacaatttttactgtatttgtggcCAAATAAAGATTTAAGAAGACTTCTTCAACCTCATCCCTTTTGATTAGCAGTTTCCAAATATGCAACTGCTCTCTCAATTATGGACATTTCTTTCAAGACCAAACAGTAGCTGGACGAATCGCTCAGAATGGTTTCAGTAAACAGAGTTGAGCCTCGGCTCAGTTAATCCAGCAAACAAACGCACTTACTGAAACCAAACCTAACCGCGTTACAGCGTCCAGACCGATCCAGGCTCGCGTTTGACGCCGGTAACGTGACATCCATGTGCGCGACGCGCCACGGAGGACGCCGAGCTGCAGCGCCGTGACCGGCCAACAGAGGCTTGCCATTACCTCATCCGTTCTCGCGCTCGCACGCGTCTGCGTTGCCGCCCCGGGCTCGTTCCGGGCCACGAGGTGAGCGCGCGCGCGGCTTTGTGCGCGGAGGCGAGCCGGCGGTCGAACTTTCGCGGGGCTCCGCGAGGCCGCAGAACCGACGCACAACAAGTGACGCCTCGGGCGGCCAACTCTCTCTCCCGAGCACAAAAGACCGCGCGCGCCGTCGCTCTCCAGCGCGCGAGCGGAGACCCGCGGCGCCTTCCGACGGCGCCGCATCTCTACACAGACGCGCTCTCCATTTTCTGCTCTTCCGCGCAAACAAAGACGCGCCGCGAAGATGGAAACCGGGAGACGGGTCGCTTTTCTCCTCCTTCCCGCTATCGGAGAGCGTCGTCAGCGTCGCTCTCATTCACAAACTCACCGATGCCGTTGCCATGGGAACCGTCTCCATCAAAGAGACGCGCGTCATGTGACGGGGACACAGCCTAGGTCCTCAGCTGCTTCATCAGTGAAAGACACGGACCGGCAGAACAGTCGTTCGTTTATTCCTTTTATAAAAACGCAGCATATTTCTAACcagatttatagatttttaagcGGGGTGTATGTACAGCGGGGGAGCTCG

Function

GO: NA

KEGG:

id description
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251597.1 True 1810 lncRNA 0.49 3 599711 608007

Neighbor

gene id symbol gene type direction distance location
znf367 znf367,LOC107726881,LOC107704585,LOC107568105 coding upstream 42331 553073 ~ 557380 (+)
prxl2c aaed1 coding upstream 62561 534683 ~ 537150 (+)
smyd1b smyd1b,LOC107712675,LOC107569675,LOC107661523,LOC108430330 coding downstream 5537 613544 ~ 628517 (+)
znf366 znf366,LOC107726882,LOC107573350,LOC107704577,LOC108430334 coding downstream 27416 635423 ~ 648303 (+)
mrps27 mrps27 coding downstream 44582 652589 ~ 658219 (+)
ptger4a ptger4a,LOC107661536,LOC107569669,LOC107704591,LOC107726867,LOC107661538 coding downstream 56624 664631 ~ 669531 (+)
loxhd1b loxhd1,loxhd1b,LOC108430301,LOC108265797 coding downstream 64863 672870 ~ 711338 (+)
G59735 NA non-coding upstream 33881 562860 ~ 565830 (+)
G59656 NA non-coding upstream 337131 159691 ~ 262580 (+)
G59662 NA non-coding upstream 363053 223973 ~ 236658 (+)
LOC122351070 NA non-coding upstream 431375 160269 ~ 168336 (+)
G59652 NA non-coding upstream 513331 86171 ~ 86380 (+)
G59762 NA non-coding downstream 18842 626849 ~ 727005 (+)
G59761 NA non-coding downstream 21665 629672 ~ 631346 (+)
G59801 NA non-coding downstream 147328 755335 ~ 766628 (+)
G59815 NA non-coding downstream 265881 873888 ~ 874199 (+)
G59811 NA non-coding downstream 339670 947677 ~ 950973 (+)
cdc14b cdc14b,LOC107661524,LOC107704583,LOC107568104,LOC107726879,LOC107570987 other upstream 49024 537775 ~ 550687 (+)
G59807 NA other downstream 195646 803653 ~ 804839 (+)
znf608 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107704598,LOC107573349,LOC107726216 other downstream 234070 842077 ~ 852004 (+)
pggt1b pggt1b other downstream 602808 1210815 ~ 1218804 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other downstream 1307453 1915460 ~ 1918371 (+)
polb polb,LOC107670984,LOC107722860 other downstream 1406852 2014859 ~ 2020034 (+)

Expression


Co-expression Network