RNA id: TU190298


Basic Information

Item Value
RNA id TU190298
length 517
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G140550
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10978574 ~ 10979090 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agctgtaccacctcctctgctgtgaccacctgctctgctccacccggcagctgtaccacctcctctgctgtgaccacctgctctgctccacccggcagctgtaccacctcctctgctgggaccacctgctctgctccacccggcaagCTGTACCACcccctctgctgtgaccacctgctctgctgtgaccacctgcactgctccacccggcagctgttcCAGATGTACTGCTGTGACCCCACATAGCTTTTCCATAGATGAGGTTTATGCTGAACTACGTAGGCTGCGTCCAGGGAAAGCTGCGGGTCCTGATGGCGTATCGCCTCGGCTTCTAAGAGAATGTGCATCAGGACTGGCGATGCCTCTACAATCAATTTTCAACCTGAGTCTGCGCACAGGACAAGTGCCTGTCCAGTGGAAAACATCATGCCTCGTGCCGGTCCCTAAAGTAGGGAGGCCGGTAGGGGTGAAGGACCACAGACCAGTGGCCCTGACTTCAGTGATCATGAAGAcattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190290 lncRNA upstream 29089 10949255 ~ 10949485 (+) True G140543
TU190262 lncRNA upstream 220104 10758255 ~ 10758470 (+) True G140516
TU190261 lncRNA upstream 222334 10755904 ~ 10756240 (+) True G140515
TU190191 lncRNA upstream 239577 10738717 ~ 10738997 (+) True G140466
TU190184 lncRNA upstream 402796 10573168 ~ 10575778 (+) False G140460
TU190306 lncRNA downstream 24727 11003817 ~ 11004526 (+) True G140556
TU190315 lncRNA downstream 148198 11127288 ~ 11128909 (+) True G140563
TU190475 lncRNA downstream 464751 11443841 ~ 11444206 (+) True G140670
TU190439 lncRNA downstream 472929 11452019 ~ 11455807 (+) True G140644
TU190476 lncRNA downstream 475480 11454570 ~ 11454829 (+) True G140671
XM_022678007.1 mRNA upstream 227899 10683596 ~ 10750675 (+) False LOC103039003
XM_022678006.1 mRNA upstream 231344 10683588 ~ 10747230 (+) True LOC103039003
XM_022678004.1 mRNA upstream 298485 10558457 ~ 10680089 (+) True LOC103042199
XM_022678005.1 mRNA upstream 298485 10558458 ~ 10680089 (+) False LOC103042199
XM_022677998.1 mRNA upstream 425973 10530993 ~ 10552601 (+) False LOC103039831
XM_015603253.2 mRNA downstream 226460 11205550 ~ 11308230 (+) True LOC103038209
XM_022678011.1 mRNA downstream 226460 11205550 ~ 11308230 (+) False LOC103038209
XM_022677705.1 mRNA downstream 340680 11319770 ~ 11330660 (+) True LOC103038536
XM_022677706.1 mRNA downstream 365501 11344591 ~ 11371098 (+) True LOC103039371
XM_022678012.1 mRNA downstream 438801 11417891 ~ 11426827 (+) True LOC111194306
TU190266 other upstream 179683 10798545 ~ 10798891 (+) True G140520
XR_001518341.2 other upstream 535207 10427266 ~ 10443367 (+) False sppl2b
TU190105 other upstream 578598 10395520 ~ 10399976 (+) True G140402
TU190104 other upstream 578598 10398381 ~ 10399976 (+) False G140402
TU189976 other upstream 651655 10311100 ~ 10326919 (+) False G140336
LOC111194305 other downstream 334443 11313533 ~ 11314374 (+) True LOC111194305
LOC103039058 other downstream 358871 11337961 ~ 11338482 (+) True LOC103039058
LOC103029197 other downstream 399032 11378122 ~ 11378859 (+) True LOC103029197
LOC103029510 other downstream 400892 11379982 ~ 11381020 (+) True LOC103029510
TU190456 other downstream 401008 11380098 ~ 11383505 (+) True G140659

Expression Profile