RNA id: XM_022678012.1


Basic Information

Item Value
RNA id XM_022678012.1
length 2196
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC111194306
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11417891 ~ 11426827 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCAGTTTCAATGCTGGGAAAAGTTCTTCCCTCTCATCAACTGATGCATTTCTGTGAAGGATACCTTCAAGATTACACAGCCACTGCTCTTTCTTTTACCTGCTATACCTAAAATTTGCTTTTTAgaataataattcaatatttgAACATTTGAACTTTTTACGCAAGATGAATTCTGCTGTTCtttcctttttcatttttgggTTTCTCATAAGCTCTGGTTTTGCAACCGGACATGAAGAGGGTTCCTGCCAGTCCCAATGGGTTAACAACGACCACTCTGGATGTGGTGTAACATCCAAAAAAGGTGATGATGTCTACGAGGCCCTTTGGGTTCGGAATATGGACATTGCCAAAGAAACATTCAACGCTGACTTTCTTGTCCATATGCAAAATGGTAGCCTTGATGCGTTTCGCTTTGTCAAGTTTACTCTGCAGGACATTTTGTACCTGCAAGTGGTGACTAACATGCTGAAAGAGGTGAGCGAGATGCCCGGGCAGCCAGATGACCTGAGGGAATTCATTACAGGAAGATACAGAAGCTACAAGGCATTTCTTCAGTCTTGGGAAAGGGACTTCTCACTTGCGGATACAaaatccatccaaccaaccccAGCCATTGAGAAGTACCTGACTTCCTACAAGAATGTGATGAATACTGAAAAAGATACTATTTACTTCACTGTGGCTCTCCTGCCGTGCTCCAGACTCTGGGTCTGGCTGGCTCAAAATCTGAAGATGCAGAAAAACAATGCCTACATCCAGTGGAAAATAGATAATATTGGGGGCCATCCTGAGAAATATCGACCCATTCTGAACAAGTATCTGAACACAACGGAAAAAGCGCAAAAGGCCAACGACATCTTCCGCATGCAAATGCAGAATGAGCATGACTTTTTTTCCACTTCTTGATTGATTTCCTATTAATTGAGAAATATCGGTGGCCATAAGGTTCCTTCTGCCCAATCCAAGTTTACGCATGAgtaaactatatattatatCCTCAAATATTCCTCCTCATTCTTTAAATCAGTGATTCTGAAAGGGCTGCAGAAAATGCTGCAAAAAAATGTGGATTGGAGTTAGTCAGGTTTGCCCATGTATTATTATCCATTTTGGATATATCTTAAATAATCACAGAGAAACATCGCAAAACCAGAAATTAAGAAAGAAATTAGCCTTTGAAAGTGTGCATGGTAGAATAAGGTATATGGGGTGGGGGTTGGGAGGAACCGGTGGCACTTACCTCCAACTGAAAAGGTTTAAAAATGCTgctttacatttgttttttgttttttttaatctactaaagaagaagaaatcGGCAAATCAATTCTAACTTTCATACAGGAACATGGTTTTTAAGTTTCAATATTTTTCAATATGTGGATACTGTTTTTGTGCCAAACCATGGCTACACCtgttcacgtttttttttttcaaactcatttgctcctaaatttccttcgggataaataaagtatctatctatctatccatccatccatccatccatccatccatctatcattTGTAGACCTACATTTTCCCTGTGCTAACTATAGTTGGAAGTGTTGGCATGCCTGAGATGCAGAATTAGACATATTTAGgaatgagagtgagtgtgtgaaatggctacaggaaCCCAATTTCCAAACCCCAGATACAGTTTCCTGCCCCCTTTGCTCATCCTCAGCTGTGAAGCTCatgcaggttgccagattgacacacactGGCAAGCAACGATGAGTCTTACTCTGTATCCAATCAgtgaatatatatgtttgcaatGTCCAAAAATGCCTGGCTCTACTACGCTAGTGGGTGTAGGTAAATTACATAGCAGTGGTTAgtgaaccttactgaagctcagtgattacctgttcagcagagaATTGGCCAGATCCTATGTTTTCATGGCTGGAGCACACAGTTTGCATGCTATTGTttgtacctggcaaccctgagtatCAAAATGGGactgggagaatggaggtgtgcaGATTTGAAGGCTAAATCCcagcatgttttcttaatatctgatgatgcaTCCtaatcatgttatgagttactacacaaaatataataattaatggtCCTAATTAAGAATGTAGATAATCAGATAAATCATGAAATGTCTTGGGTTCATACAGTCTGTaatcaaatcaaaataaaagtaaatgtaagtggAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190315 lncRNA upstream 288982 11127288 ~ 11128909 (+) True G140563
TU190306 lncRNA upstream 413365 11003817 ~ 11004526 (+) True G140556
TU190298 lncRNA upstream 438801 10978574 ~ 10979090 (+) True G140550
TU190290 lncRNA upstream 468406 10949255 ~ 10949485 (+) True G140543
TU190262 lncRNA upstream 659421 10758255 ~ 10758470 (+) True G140516
TU190475 lncRNA downstream 17014 11443841 ~ 11444206 (+) True G140670
TU190439 lncRNA downstream 25192 11452019 ~ 11455807 (+) True G140644
TU190476 lncRNA downstream 27743 11454570 ~ 11454829 (+) True G140671
TU190441 lncRNA downstream 29010 11455837 ~ 11478740 (+) False LOC111194237
TU190487 lncRNA downstream 74229 11501056 ~ 11517675 (+) False G140676
XM_022677706.1 mRNA upstream 46793 11344591 ~ 11371098 (+) True LOC103039371
XM_022677705.1 mRNA upstream 87231 11319770 ~ 11330660 (+) True LOC103038536
XM_015603253.2 mRNA upstream 109661 11205550 ~ 11308230 (+) True LOC103038209
XM_022678011.1 mRNA upstream 109661 11205550 ~ 11308230 (+) False LOC103038209
XM_022678007.1 mRNA upstream 667216 10683596 ~ 10750675 (+) False LOC103039003
XM_022677707.1 mRNA downstream 6724 11433551 ~ 11435570 (+) True LOC103030163
XM_022677709.1 mRNA downstream 54922 11481749 ~ 11493706 (+) True LOC103022687
XM_022678014.1 mRNA downstream 94613 11521440 ~ 11530907 (+) True nol7
XM_007232509.3 mRNA downstream 149285 11576112 ~ 11607386 (+) False retreg1
XM_007232510.3 mRNA downstream 164986 11591813 ~ 11607386 (+) True retreg1
LOC103029835 other upstream 11560 11405424 ~ 11406331 (+) True LOC103029835
LOC111194198 other upstream 16521 11400637 ~ 11401370 (+) True LOC111194198
LOC111194199 other upstream 18888 11398281 ~ 11399003 (+) True LOC111194199
LOC111194233 other upstream 22268 11395105 ~ 11395623 (+) True LOC111194233
LOC103023731 other upstream 34266 11382793 ~ 11383625 (+) True LOC103023731
LOC111194235 other downstream 2041 11428868 ~ 11429371 (+) True LOC111194235
LOC103030487 other downstream 11594 11438421 ~ 11438953 (+) True LOC103030487
LOC111194236 other downstream 23547 11450374 ~ 11450943 (+) True LOC111194236
LOC111194307 other downstream 25108 11451935 ~ 11452606 (+) True LOC111194307
LOC111194237 other downstream 28658 11455485 ~ 11456010 (+) True LOC111194237

Expression Profile