RNA id: LOC111194307


Basic Information

Item Value
RNA id LOC111194307
length 567
RNA type V_segment
GC content 0.44
exon number 2
gene id LOC111194307
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11451935 ~ 11452606 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACCAGATGCTGACTGTAACCCAGGAAATGACATCACAGACTCATAACTGATAACACTGCTGCGTTCACGCAAACAGGGTGGAGGTGGTTGAGGTGCAGGTGAGAGCATTTCATGAAGAAATCACTTTTTCTCAACTGAATGAAATATGAATATAGCTGTGTACGCTGTTCTTTTCTCACTGACTGCAGTGGGAGTTCTGGGACTGACGGTGGAACAAAGTCAGCTCTCCTGGACAAAACCTCTGGGCAAGACAGTTTACATAAACTGTAAAGTGACTGATCTAGCCAATGATGAGTACGTCCACTGGTACCATCAGAAAGATGGAGAAGCTCTGAAAAGGATTCTGTATGTTAATAAACAAGCCACGAGCACTGTTCATGATCCAAACTATCCTGAAGCAAAAGACTTCTCTGTGACTCTAGAGAAGAGTGATGCAGGTGATACGTATACTCTGAAATTAGGCGCAGTGAAGCTCAACCATGCTGGAGTTTATTACTGTGCCTGCTGGGTCTATGACAGCAGCCACAGTGAGATAAACTGCTCACATCCTGTACAATAACTACTGT

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190475 lncRNA upstream 7729 11443841 ~ 11444206 (+) True G140670
TU190315 lncRNA upstream 323026 11127288 ~ 11128909 (+) True G140563
TU190306 lncRNA upstream 447409 11003817 ~ 11004526 (+) True G140556
TU190298 lncRNA upstream 472845 10978574 ~ 10979090 (+) True G140550
TU190290 lncRNA upstream 502450 10949255 ~ 10949485 (+) True G140543
TU190476 lncRNA downstream 1964 11454570 ~ 11454829 (+) True G140671
TU190441 lncRNA downstream 3231 11455837 ~ 11478740 (+) False LOC111194237
TU190487 lncRNA downstream 48450 11501056 ~ 11517675 (+) False G140676
TU190488 lncRNA downstream 48450 11501056 ~ 11520012 (+) False G140676
TU190425 lncRNA downstream 54058 11506664 ~ 11513421 (+) True G140637
XM_022677707.1 mRNA upstream 16365 11433551 ~ 11435570 (+) True LOC103030163
XM_022678012.1 mRNA upstream 25108 11417891 ~ 11426827 (+) True LOC111194306
XM_022677706.1 mRNA upstream 80837 11344591 ~ 11371098 (+) True LOC103039371
XM_022677705.1 mRNA upstream 121275 11319770 ~ 11330660 (+) True LOC103038536
XM_022678011.1 mRNA upstream 143705 11205550 ~ 11308230 (+) False LOC103038209
XM_022677709.1 mRNA downstream 29143 11481749 ~ 11493706 (+) True LOC103022687
XM_022678014.1 mRNA downstream 68834 11521440 ~ 11530907 (+) True nol7
XM_007232509.3 mRNA downstream 123506 11576112 ~ 11607386 (+) False retreg1
XM_007232510.3 mRNA downstream 139207 11591813 ~ 11607386 (+) True retreg1
XM_022678016.1 mRNA downstream 191430 11644036 ~ 11655408 (+) True LOC103030795
LOC111194236 other upstream 992 11450374 ~ 11450943 (+) True LOC111194236
LOC103030487 other upstream 12982 11438421 ~ 11438953 (+) True LOC103030487
LOC111194235 other upstream 22564 11428868 ~ 11429371 (+) True LOC111194235
LOC103029835 other upstream 45604 11405424 ~ 11406331 (+) True LOC103029835
LOC111194198 other upstream 50565 11400637 ~ 11401370 (+) True LOC111194198
LOC111194237 other downstream 2879 11455485 ~ 11456010 (+) True LOC111194237
TU190829 other downstream 785382 12237988 ~ 12240625 (+) True G140931
TU190827 other downstream 926390 12378996 ~ 12381554 (+) True G140930
TU191019 other downstream 1288867 12741473 ~ 12743453 (+) True G141086
TU191033 other downstream 1390208 12842814 ~ 12849942 (+) False LOC103029537

Expression Profile