RNA id: XM_022673199.1


Basic Information

Item Value
RNA id XM_022673199.1
length 9426
RNA type mRNA
GC content 0.44
exon number 26
gene id daam2
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 34274391 ~ 34471605 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCCTGTCcgcgtgcagcagcagcagctctgtctCTCAGTCAGTCAGCGTTACTGAGGCTGGAGCACAGGtttacacacacgcagacacgcCGAGCCTCAGCGTTTCCCTCCTCTACTGACCGAGGATCATCATTAACGGATTAAACTCAGCACCATGATCCTGTCCTCCATCAAAACACTCGATCATGCCCCCTAGATAGCAGACTCAGCGTTTTTCGCCTTTCTGGCCCCCGGCCCCGGCCTCGGCCCCTCCAGCCTGGAGAGGATGCCTCCCCGGAAGCGCACGCGGCCAGCCCTGGGCTTCCTGTGCTGCTTCGGCAGCAGCGAGCCCCCTGAGATTAACCTGAAGGACAGCGTCCCCCTGCAGCTGCTGGAGTTCAGCGCCCCCATGCCCCCGGAGGAGGAACTGCATGCCCGCTTCTCTGAACTGGTGGATGAACTGGACCTCACTGATAAGAACAGGGAGGCCATGTTTGCCCTGCCGGCTGAGAAGAAATGGCAGATCTACTGCAGCAAGAAGAAGGAACAAGAGGATCCCAACAAGCTCGCCACCAGCTGGCCTGACTACTACATAGACCGTATCAACTCCATGGCTGCTATGCAGGCACTTTTCGCATTTGACGAGGAGGAGATGGAGATGAGGAATAAAGTGGTGGAGGATCTGAAGACGGCACTCCGCACTCAGCCAATGAGGTTTGTGACGCGCTTCATCGAGCTGGATGGTCTGACCTGTCTGCTGAACTTCTTGAAGAGCATGGACTTCGAGACTTCAGAGAGCCGCATCCACACCTCCATCATCGGCTGCATCAAAGCACTGATGAATAACTCTCAGGGCCGGGCTCACGTCCTCGCCCACCCGCAGAGCATCAACACCATCTCTCAGAGCTTACGCCAGGACAACATCAAGACCAAGGTGGCTGTGCTGGAGATCCTGGGTGCGGTCTGTCTGGTTCCTGACGGCCATAAGAAGGTGCTGCAGGCGATGGCTCACTACCAGAAGTACGCTGCGGAAAGGACGCGCTTCCAGACTCTTCTGAACGAGCTGGACAGGAGCACAGGGCGCTACAGAGACGAGGTCAACCTGAAGACGGCCATCATGTCTTTCATTAACGCTGTGCTGAACGCTGGAGCGGGAGAGGACAACCTAGAGTTTCGCCTCCATTTAAGGTACGAGTTTCTAATGTTGGGCATCCAGCCAGTCATCGACAAGCTCCGAGGTCACGAGAACGCAACCCTCGACAGACATCTGGACTTCTTTGAGATGGTGCGAAATGAGGACGACAGTGAACTGGCCAAGCGCTTTGACATGACGCACGTGGACACCAAGAGCGCCGGCCAGATGTTTGAGCTGATCAAGAAGAAGCTGAGCCACTCAGATGCCTACCCTCACCTTCTGTCTATTCTCCAGCACTGCCTTCAGATGCCATataaACGTGGTGCAGGTGGCATCCAGCAGTGGCAGCTTCTAGATCGAATCCTCCAGCAGATTGTTCTGCAAGATGACAAAGGAGAAGACCCGGATGTTTCTCCATTGGACAACTTCAATGTCAAGAACATCATTCGAATGCTCGTCAATGAGAACGAGGTGAAGCAGTGGCGAGACCAGGCTGAGAAGTTCAGAAAAGACCATGCTGAGCTGATGGCACGGCTGGAGAGGAAGGAGCGCGAGTGTGAGACCAAAACCCAAGAGAAAGATGAAATGATGAAGACTCTGAACAAGATGAAGGATAAGCTGCAGAGGGAAGGAGTGGAGCTGCGCTCTGCCAGAGAGCAGGTTATAGACCTGTCCTCTCGGATCAACGACTATTCGAATGGAGGTGTCCCATTccctccaccacctcctccacctggAGGCCCGatggctcctcctcctccacccatGATGGGTGGCTttcctccgcctcctcctccactCCCCTTCTCCAGCCCACCCCCGCCTCCACCCCCACCTCCTCCCGGCGGTCCACCTCCTCCACCCGGAGCGCCCCCACTCTTCACCGGAGCTCCGCCTCCTCCAGGGCCCGGCTccttcagcagcagcaccaccagCCTGCGCACCAAGAGCATCCCACAGCCCTCGCATCCGCTCAAGTCCTTCAACTGGGCCAAACTGGGCGAGAACAAGATTACTGGTACCATTTGGCACGACATCGATGACCTGAGGGCCTTCAAAGTTCTCGATCTGAAAGAAATCGAGAAGATGTTCTCGGCTTATCAGAGGCAACAAGAGCTGCTCACTAACCAATCCTTCAAGCAGAAGGAGACCGGCTCCATGGACGACTTGTACCTCACCTCACGGAAAGTGAAGGAGCTGTCAGTCATCGATGGGCGGCGGGCACAGAACTGTGTTATCTTGCTCTCCAAGTTGAAAATGAGCAATGAGGAGATCAAGCGAGCCATTCTGGAGATGGATGAGAGGGAGGAACTGGCTAAAGATATGCTTGAGCAGCTGCTTAAATTCGTTCCCGAGAAGAGTGACATTGACCTTTTGGAGGAGCACAAGCATGAGTTGGAGCGCATGGCCCGAGCCGACCGCTTTCTCTTCGAGATGAGCAGGATTGACCACTACCAGCAAAGGCTTCAGTCTCTCTTCTTCAAGAAGAAGTTTGCAGAAAGACTGGCAGAGACCAAGCCAAAGGTTGAGGCCATTCTCCATGCATCCCGTGAGCTGGTGAGGAGTAAGCGTCTGACTCAGATTCTGGAGGTGGTCCTAGCCTTTGGGAACTTCATGAACAAAGGCCAAAGAGGGAATGCCTACGGCTTCAAAGTGTCCAGCCTGAATAAGATAGCTGACACCAAGTCGAGCATAGACAGGAGCATCACCATGTTGCACTACCTGATCATGATCTTTGAGAAGAACTATCCTGACACCCTTAACATACCGCAGGATCTGCTCAGTGTCCCAGATGCAGCCAAAGTCAATCTGGCTGAACTGGAGAAGGAGGTCTACAGTATAAAGAGTGGACTAAAGGGTCTGGAGGCTGAGCTGCAGTACCAGCAGGCCAGAGTACGAGACAGAGGGGACAAGTTTGTGCCTGTGGTCAGCGACTTCATCACAGTGGCCAGTTTTAGCTTCTCTGAGTTGGAGGATCTGCTGAACGAGGCAAAAGAAAAGTTTATGAAGGCGCTGAAGCACTTTGGAGAGGAGCAGGGGCGAATGCAGCCGGATGAATTCTTTGGGATTTTTGACACCTTCCTGCAGTCATTCAGTGAGGCTCGGCAGGACCTGGAGAACATGCAGCGCCgtaaggaggaggaagaaaagagAGCACGTATGGAGGCTATGTTGAAGGATCAAAGGGAGCGAGAAAGGAGGGCCAAGAAAAGTGCAGGAGGTGTGTCCGAGGAAGTGGGCGAGTTCGATGACCTGGTGTCGGCCCTGCGCTCGGGAGAAGTGTTTGATAAGGACCTCTCAAAGCTGAAACGCAACCGCAAGCGCTCAGTCAACCAGCTGGTGGAGAGCGGTGGGCGCGAAAGGCCAATCACCAAGGTCAACTATTGACCCCTGTGAAAGCTTGTTTCACAGACACTGTACCTGAAGGAAACTCCTAACTGCCGTACGCCTCCCTTGTCACCTACATCTTCCATCCTGTCCTAACCCATAACGATTTACAAGCTAAAGACGACAGACACTGTGGGACAGTCCTCTGTGTGCCGGAAATTCCTAGAGCACTGTGCTCCATACACTTTCTTTAATCTCCTCTTATTGCTTATTCCTAAAGAAATCCTACATGGTCTTCCTCCTCCGCATGTATGAAGATGATGGtggtgaagatgatgatgatgatgacgagtATTCACTCCTCCAGATCAACTCCAAATGTAGCCTCAAACTGCCGAGTTCCCAAACCCACCACTGCAGTGTCCAgattttagttttagctttcaCGTTCACGATTACCGCAAAATTATCACAAGATGGTTACGATTAGCCTGAGAAGAACCGCTAGTCTAGGTCCAATATGGTTGGCTGGTGCCATAGCCTGTACTAGTAGCACTTGGAGATTGGAAATGGGTCAATCTAGTTCAGGTTGCAAACATGTTTGAGCAGAACATGGGAGGACTCTCTGAAACACCTCTGGACACCTTTTTGCCCTGTGTTGAAAGACACTGCCAGCTGTGTTAGGTGCTGATACCCTGTGTGCCTCTCTCTCCAGCTACATTTCTCTGGTGCTTTGATTAGAAGACCGTGTCCTCTCCACTATAGTATGAGAACAATgagagactgagaaaaaaaaatgagagagggaggggaaacataataattaaaaaaaaaatcttggctAATGCAATAACTAATACCACATCAGGCTGAACAATGAATCTAACGTGGCTACTCAGCTAGCGATAGAGAAAAACTAGCGATAATAGATTGTCAACcttatgtatgtaatgtatggtGGTATCGTAGATGAAACAAGGATGAGGCAAGCAGGAGAACCTCTTAATAATGATGGCCAGTtagggaaagaaaaaaacaaaacaggacaCTGTGGTCGCAGCCTTTACTGGCTGGGATACCCCCTTCACAAGTGCCTCCGCTAAATAGATGGCATTCCCAAGGACTACATGACTATGTGAAGTTGGAGGTGCCGAGAAAGCACAGCACGTCTGGGGGGAAAAAGACTGAAGTGTAAAGAACCAAAGCGTTCTGAGACCGGAAGATGCTGAAAGCATGTGTCAAAGTTCAGTCTGTCTAAAACTCAATCAAAGGATTTGTGATGGTACTGCAAAAAAAGTGCCAAAGTGGAAAAGAATAGGGACGAAAACTAAAAGTTTATATGTAGTACACAATACTAAATGCAGGTAGAGTGgcatttatagtatatatttatacaaagacatgccaattttttttttgtaagctcTCCAAACATTTTCTAGTTTtcctttaatactttttaataattcctgtaaagttgtttcCCTTGATAATTGATAAAGGTCTTGCGTTCATGcaatacaaacataaaaaaatatataataataaaagcaacaACATAGATGTCATGCTCTGTCATTGGTGACCACTCAGACTAGTCACCCCAAATCCACTAACAACCTATAGTGCCACTCTACCCTGTATCATCTTTAGGCCAAGAGTACTTTCAGTATGtagaagtataaaacatataaaaagaaGATACATGCAGATTGTGTTACTAATTCAGTCAGTTAGTCAATATATAACAGGTATGCATTTGTTGGTTTATTTGCATCCTCAGTGGTCTCACTCAAACCAGTCAATGAGCTCCAAATCCAGATGACGCAACCCACTTTCTTTTccatctatatataaatatatatatatatttttgtttgtttttgttattggtTTTCATGACATGTATATTAAGTGTTTCTGTAGAGATGTACGTAAGACAAAGGTTGCAAATGCACGGACAATGACCTATTCGGATGCATATTGCTCCCAAGAATGAAAGGAATGATGAGAGATATTGGGAGGGGGACGAACCAGCAAACCGAGGACAGATTGAGAGtaaggctgtgttcagactgcaggcaaatcgGATTTGTTCttaaatcagatctgttgagatAACTGCATGACCGCCGTGGTTATGAGGTCTGCATTAGTAATTAATGTTAATGGCACTCTTTATGGACTTAGGTTTGAGCACCCAGACTGTGACGAATCTGTATAAAATGCAATCTAATCACTTTTCAAACCACCTCCAAATCTGGTTTGGATCCCATTTGCTAAAATCGGATTTtgtgtggtttctggctgtccAGACTGTCAAacatcaatctggatacaatctagatatgccaaaaatcagacTTGTTTCCCAAATCAGAGGTGACTGTCCGTCCTGTTATTTGCAAGTGATCAGATCGGATGTGTCCAGACTGCTGTGGTAATGAAGTCAGTGTCCGAAACTACCCTTAGGCACTTTTTTGGATCTctgcatttcattttaaatatgtataaatctgATTTCTTGTGGGTTTTCTGGCTATCAAATCTGGATACAAATCTCGATTTGGGTTGGCTGTCTGAACATTGCCTAAGAGTAAagtgtaaatattattattatttttttttttttggtgatacCTGGTTTTGCAAGATTGTTACGGGTTAGAGACATTAATATGCGTGTTTCTTTTccatttcctttcttttttttgtcctgtCTTGCCCATCTGTGGATGGGTAAACCAATGGTTTAAGGCAGTTAATACAAGGATTCCTCCTTCTTATCTCTTAAGGGATAATAGATTTGATTGATTATTTAAAGCCTTGTTGTTAATCTTTCATTAGGGTGGTACCACCCCATGCCCATTAAGTTGGGGGTTGGATTTGGGGGTTTAGGTTTGGACAAGGATTCTTTGCTACTTTctactttttacttttctgcCAGTGCCAGTATGCCAGGAGGAGGGTACTTTATCCATAAGCCAAAAGGTGAGGTGAGCTTAGGTGGTTATTGGTtgcacaaaatataaaatagcacACAGACACAGCATATGGTGCCATTACAGAGAATTACTGcatatttttctcattattctagtttttttttttttcttttgagagGGGACGGGTTTCCTTCTTGGTGTTTAATACGTAAAAGGTGAGGGCTTGGGTGTGGTCactttctttcattatttatatatacctatatatttttttcctctaatGAGCATATACCAAAAGTACTAACCAAATACCCAGTGTTCAGTCTGACTGATCTAATCAAACACTACcttatttaataatgtattgcATATTAATAAATGTGAGCTTATCGGCTTAATCAATCAGGTATAGCGGCACTAGTTCCAGACCCTTAAATTATAAGCTGAATACGCCTAATGCTAGACCATAATGGCCAGGACAAAGGTGAAGGACAAAGGCTGTGTTCAGCCTAAAGACAAAGCAGATTTCTCAAATCAGACCGGATGAGATGACTGTCCACACTGTTATCTGCAAGTGATCAGACATTACAAATGTATGCACATGAGCTGCTGTGGTAATGAGGCCTTTTTGAGCTCTTCTTGGACCCTTACACTTGTCACTCCCTGGATATGAAAAGGTCGCTGTTTGTTACACTGTGACACAAAAGAcacctttaatttaaaaattcaatttgAGTCCAGACTAAGATGAATCTGTACAAATCTGACTGTGATTGCATTTTAGACCGCCACCAAATGTGGTTTAGGTCAGATTTGCGAATGGTTACGTTCGGTTATGTTTGGACTTCTAGTTCAAATGTATATCTAGATTGATTTTCAGCATATCTAGATTTGTATCCAGATTGAAGGTTGATAGTCTGGACAACCAAAATTCAGAGGTGATTTGAAATGAGATTATAATCAGATTAGTACAGATGTGTCTCAATCTAGATGCTTAGTGTATTTAATTGTGTCTCTTGTATCACTTGCTATGCAACAAACTCCAAGCAAATTATCACaacaacccatgcagatatgtTGTGATGTGATTTCTCTACCCGCTAATACGATTTGATTACAGGAAAATAACATTGCAGTGAGACAGTCATCTTAACAGATCTGATTTAAGAACAAATCTGATTTGCTTGTAGTCTGAACACATCCTAAGAGACAGGAGAATGGTATTAAAAGGGTTTAGAGGTCTGCAGCTAAATGTGGGGTAATTTTCCTTCAGTATGTAACTGAAAACATTATGTAAAATGGTGACTGTGTCCTTCCTGTAAAGTAACGCTATGTTGTTTAATAGATGAAGATATAGGCCTTGAATACCAAATAGGAAAAGGAACATATTAACCCGTTCATTGACACTTTGGAATGTTTCTCGCATTGGATTTATAAATTTGATGTTTCGATGAAGGAAAAGGATTGACAGATTAATTATGTCACAGATTAATgagcattttctttctctgtgcCAATGCCAATTTTAAAAATAGGTGTCTAAATATTTGGGCCTGTGGGTTCATTCTATTCTTCAGCTCAAAATATTTTTAGCAGTGAGAAAAAAGCGCTTTAGCAGATGCTGGTAGAAATATATGGTTGCACAGTATACCAGTAGAACAGTCTAAGCTCACTTTCTTTAGTCTGATACCACGGGGTATTTGAAGATCATCagtattatcatttatttttaattttgtagaTTTATTTTGATATATGTACTATGAATGGTCATTGACTGGCCAGACAGAATGGAaagaaaagataataataaatgtagctTTGTTGCTTGATGCACTTTTGTTTTGTAGGAAAGGCTTTTTTCCTGCACCCTCAGTATGGACACGCAGCTCACGCagcttattatcatcatcattattataataattattaaaggaaaaataatgCATAGAGGCAGAGAAGTTTGTGgaacgagtgagagaaagtaagagaaagtATGGTCAGATTTATTTTGGTAGGAAAGATAGCCCTTCTAAATTGTATTAAAAGGTGGCTGGCTACAGCTCCCCTTGGCCTGAACTAGGCATCATCTACCCGTAGAGGAAAAAAGTGGGATGGAACTGGTTTTACGTCAGTATGTGGTTAAATTCACAAAGGGACAAGACAGGAAGTGCCAATACAGACTTTTTAAATGCACATTTGACTTTGGTCTGGTGACCACATGTTGACACTATGATGAGGAGATAAATATATAGAGAATGTAGTCCTTTAGAGTTAAACTTCAACTGCATCAGATCAGAGCACACCACTATCCTCCACTGCCTCCATGTGCatcactttttttgtatttttttttctcttctccaaGCGAATGTTTGCCTTTTTCACCTTCGTTTGGTCCAGTAATGAATGCACTTGTTGTTGTTTGCCAGAACGACTCGAACGTGGTGCACAAGTTTGATCctttggtaaaaaataaataaataaataaaaataaataaaagatttatATTATGGGTAAttgtatagaaaaaaaattacctgCGACCTGAGACACAACCTTTACACGAGTTACACGACCTTTGTATTGACCATAGAAAGCTGCACTCGACTTTGGCAGGTTGTATATTGTGCAGAGTGAGTATTTTTAAAAGGTTGACTTGACTAGCTTCACCCGAAAGATGTATAGTTCTGAAATATTTTGTACACCGTTATTGTTGTTTGaggaaaatgaggaaaaaaaaagtgaaaagtaaaaaagaaaaaaaaaaaaagttatggaatgttccattttttttcctgtaaattgAATCTCTATTTATTTGCCTTATTTAGTTTGCTATATTTTGTATGTATACACAGCATTACagcaaaaatgttatataaatatgaataactATACTGTGGTCCCTGTATGTCAAATAGGTTTTTCATTCCCATCATAGTCTgaaaaactttcattttataatttttgtttgttttgtttttgctcgACATGCGTCCTTTTGTAGGGTAAAATAAACCTGTTTCCCTTAcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115343 lncRNA downstream 43397 34230891 ~ 34231119 (-) True G85660
TU115339 lncRNA downstream 47774 34222905 ~ 34226742 (-) True G85659
TU115333 lncRNA downstream 67709 34206229 ~ 34206807 (-) True G85654
TU115289 lncRNA downstream 424747 33848560 ~ 33849769 (-) True G85617
XR_002650286.1 lncRNA downstream 470995 33775203 ~ 33803521 (-) False LOC111193147
TU115415 lncRNA upstream 77998 34549603 ~ 34550024 (-) True G85715
TU115419 lncRNA upstream 104266 34575871 ~ 34576214 (-) True G85719
TU115422 lncRNA upstream 152972 34624577 ~ 34636106 (-) True G85722
TU115503 lncRNA upstream 224680 34696285 ~ 34696518 (-) True G85776
TU115514 lncRNA upstream 254940 34726545 ~ 34729144 (-) True G85782
XM_022673195.1 mRNA downstream 261959 33955195 ~ 34012557 (-) True rbks
XM_022673196.1 mRNA downstream 265865 33955195 ~ 34008651 (-) False rbks
XM_022673192.1 mRNA downstream 364509 33857299 ~ 33910007 (-) True LOC103040637
XM_022673191.1 mRNA downstream 444773 33820065 ~ 33829743 (-) True supt7l
XM_022673189.1 mRNA downstream 798827 33201802 ~ 33475689 (-) True LOC103041514
XM_007248454.3 mRNA upstream 327534 34799139 ~ 34867074 (-) False zdhhc14
XM_007248453.3 mRNA upstream 327534 34799139 ~ 34867074 (-) True zdhhc14
XM_022673204.1 mRNA upstream 398540 34870145 ~ 35195330 (-) True LOC103041141
XM_022673205.1 mRNA upstream 398540 34870145 ~ 35180211 (-) False LOC103041141
XM_022673208.1 mRNA upstream 849864 35321469 ~ 35337462 (-) True cldn20
XR_002650389.1 other downstream 261954 33955389 ~ 34012562 (-) False rbks
XR_002650288.1 other downstream 335815 33938460 ~ 33938701 (-) True LOC111193148
TU115290 other downstream 434887 33834012 ~ 33839629 (-) True G85618
TU115204 other downstream 755845 33509680 ~ 33518671 (-) True G85550
TU115139 other downstream 1162782 33111474 ~ 33111734 (-) True G85501
TU115663 other upstream 816627 35288232 ~ 35295034 (-) True G85902
XR_001518670.2 other upstream 2120028 36591633 ~ 37101581 (-) False nrxn3
XR_002650394.1 other upstream 2120028 36591633 ~ 37087931 (-) False nrxn3
TU116404 other upstream 3511269 37982874 ~ 38069052 (-) True G86432
TU117171 other upstream 6061763 40533368 ~ 40536334 (-) True LOC111193261

Expression Profile