RNA id: TU115514


Basic Information

Item Value
RNA id TU115514
length 485
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G85782
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 34726545 ~ 34729144 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacacacacacagatatacagtaaACACAATTACCTGCTACAAGATCACCAAATCCAATAGTGGTCAAAGTCACAAATGAAAAGTACAGCCCCTCTATGTAGGTCCAGCCCTCTTGAGACATGAAGACGAATGGAGGAATAACCAAATGAACCAATACCCCCCACAACAGGAAGATGGCTGTGCAGGTGAACTGTGCTTTCCGCAGTGTGACTCCTCTCTTGGTGAGATACTGTCCAAGATGTTTTGCTCTTCCACCAAAAAACTTGCCGAGTTCACTGATCCAGGTGAGACAAAGTGGGACACCAAACAGTCcataaaaaatgcagaaaacccGTCCTGACGGTGTTTTGGGGGCAATATTGCCATAACCTATAGTCGTGATGACTGTAGCAGCGAAGATGACGGCGTTGGGCCAGTTCCAGTTGTTGAAGGTTTTATCTCCCGTTATGGTGACACCTTGTCCAGCAGCTTCAGACACCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115503 lncRNA downstream 30027 34696285 ~ 34696518 (-) True G85776
TU115422 lncRNA downstream 90439 34624577 ~ 34636106 (-) True G85722
TU115419 lncRNA downstream 150331 34575871 ~ 34576214 (-) True G85719
TU115415 lncRNA downstream 176521 34549603 ~ 34550024 (-) True G85715
TU115381 lncRNA downstream 395198 34267456 ~ 34331347 (-) True G85687
TU115513 lncRNA upstream 3395 34732539 ~ 34735575 (-) True G85781
TU115505 lncRNA upstream 37683 34766827 ~ 34767684 (-) False G85777
TU115508 lncRNA upstream 37683 34766827 ~ 34767684 (-) True G85777
TU115633 lncRNA upstream 472336 35201480 ~ 35300903 (-) True G85884
TU115667 lncRNA upstream 601937 35331081 ~ 35331679 (-) True G85906
XM_022673201.1 mRNA downstream 254940 34274516 ~ 34471605 (-) False daam2
XM_022673199.1 mRNA downstream 254940 34274516 ~ 34471605 (-) False daam2
XM_022673200.1 mRNA downstream 313435 34274516 ~ 34413110 (-) True daam2
XM_022673195.1 mRNA downstream 713988 33955195 ~ 34012557 (-) True rbks
XM_022673196.1 mRNA downstream 717894 33955195 ~ 34008651 (-) False rbks
XM_007248454.3 mRNA upstream 69995 34799139 ~ 34867074 (-) False zdhhc14
XM_007248453.3 mRNA upstream 69995 34799139 ~ 34867074 (-) True zdhhc14
XM_022673204.1 mRNA upstream 141001 34870145 ~ 35195330 (-) True LOC103041141
XM_022673205.1 mRNA upstream 141001 34870145 ~ 35180211 (-) False LOC103041141
XM_022673208.1 mRNA upstream 592325 35321469 ~ 35337462 (-) True cldn20
XR_002650389.1 other downstream 713983 33955389 ~ 34012562 (-) False rbks
XR_002650288.1 other downstream 787844 33938460 ~ 33938701 (-) True LOC111193148
TU115290 other downstream 886916 33834012 ~ 33839629 (-) True G85618
TU115204 other downstream 1207874 33509680 ~ 33518671 (-) True G85550
TU115139 other downstream 1614811 33111474 ~ 33111734 (-) True G85501
TU115663 other upstream 559088 35288232 ~ 35295034 (-) True G85902
XR_001518670.2 other upstream 1862489 36591633 ~ 37101581 (-) False nrxn3
XR_002650394.1 other upstream 1862489 36591633 ~ 37087931 (-) False nrxn3
TU116404 other upstream 3253730 37982874 ~ 38069052 (-) True G86432
TU117171 other upstream 5804224 40533368 ~ 40536334 (-) True LOC111193261

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00004093 True 5311 mRNA 0.40 7 CM030121.1 32876810 ~ 32900670 (+)