RNA id: TU115667


Basic Information

Item Value
RNA id TU115667
length 549
lncRNA type intronic
GC content 0.46
exon number 2
gene id G85906
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 35331081 ~ 35331679 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCGAGAGGACAGTTAGAGTTACAGCTATGGAAaggaataaaaacaagaaaatatacTCATTGTTGAAAAAATGGTTGCGAAAATAGGTGCACACAGTGGGAAGTGGCTGATTGCAATGCTACTGAAAATGAACaaggggtgccgagtggtccagcggtctaaagcgctgccactatgagcaggaggtcgcaggttcgaacccccgctcatgcagctttgccatcaagctgccggcattagagggagcaaaattggccctgctccctccgggtgggtagatggtctctctccccacatcactcctaggatgatgtctgcatcagcagcagctcgaaaagaagcggtggctgacttcacatgtatcggaggaagcatgtgttagtcttcaccctcctagtgtgctggagcattactagtgatagggggagtcctaatgagtgggttgggtaattggccgtgtaaattggggagaaaatggggaaaaattagaaataaaattataaaaaaaaaaatgaacaaaaaaacaaatctcaAAATTTAAGACTTGG

Function

GO:

id name namespace
GO:0021532 neural tube patterning biological_process
GO:0060429 epithelium development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115633 lncRNA downstream 30178 35201480 ~ 35300903 (-) True G85884
TU115505 lncRNA downstream 563397 34766827 ~ 34767684 (-) False G85777
TU115508 lncRNA downstream 563397 34766827 ~ 34767684 (-) True G85777
TU115513 lncRNA downstream 595506 34732539 ~ 34735575 (-) True G85781
TU115514 lncRNA downstream 601937 34726545 ~ 34729144 (-) True G85782
TU115678 lncRNA upstream 43370 35375049 ~ 35380580 (-) True G85915
TU115685 lncRNA upstream 212273 35543952 ~ 35544426 (-) True G85922
TU115689 lncRNA upstream 223181 35554860 ~ 35555189 (-) True G85926
TU115691 lncRNA upstream 245257 35576936 ~ 35579100 (-) True G85927
TU115731 lncRNA upstream 272699 35604378 ~ 35605763 (-) True G85955
XM_007248455.3 mRNA downstream 3787 35321469 ~ 35327294 (-) False cldn20
XM_022673204.1 mRNA downstream 135751 34870145 ~ 35195330 (-) True LOC103041141
XM_022673205.1 mRNA downstream 150870 34870145 ~ 35180211 (-) False LOC103041141
XM_007248454.3 mRNA downstream 464007 34799139 ~ 34867074 (-) False zdhhc14
XM_007248453.3 mRNA downstream 464007 34799139 ~ 34867074 (-) True zdhhc14
XM_022673212.1 mRNA upstream 16505 35348184 ~ 35510745 (-) False tiam2
XM_022673209.1 mRNA upstream 16505 35348184 ~ 35510744 (-) True tiam2
XM_022673211.1 mRNA upstream 16505 35348184 ~ 35510743 (-) False tiam2
XM_022673210.1 mRNA upstream 16505 35348184 ~ 35464580 (-) False tiam2
XM_022673213.1 mRNA upstream 225529 35557208 ~ 35600287 (-) True scaf8
TU115663 other downstream 36047 35288232 ~ 35295034 (-) True G85902
XR_002650389.1 other downstream 1318519 33955389 ~ 34012562 (-) False rbks
XR_002650288.1 other downstream 1392380 33938460 ~ 33938701 (-) True LOC111193148
TU115290 other downstream 1491452 33834012 ~ 33839629 (-) True G85618
TU115204 other downstream 1812410 33509680 ~ 33518671 (-) True G85550
XR_001518670.2 other upstream 1259954 36591633 ~ 37101581 (-) False nrxn3
XR_002650394.1 other upstream 1259954 36591633 ~ 37087931 (-) False nrxn3
TU116404 other upstream 2651195 37982874 ~ 38069052 (-) True G86432
TU117171 other upstream 5201689 40533368 ~ 40536334 (-) True LOC111193261
TU117264 other upstream 5432413 40764092 ~ 40770471 (-) False LOC103044865

Expression Profile