RNA id: XM_022673208.1


Basic Information

Item Value
RNA id XM_022673208.1
length 5746
RNA type mRNA
GC content 0.48
exon number 2
gene id cldn20
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 35321469 ~ 35337462 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttctctccctctctctctctttctcgttcaTTTCTCTCGTTCATCGCGCTCTCGTTCATTCCTTCTCTCCCTGCCGCCTCGCCAATCCTCCAGTCAGCGCTAAGCTGATATGACAAACTGTTGAAGTAATCATGCCAGACCCAGCAGAGCCCTGCTCCCCCTCAGATCTCCCTCCCTCGCAtgctcgttttctctctcttcccctgcCGAGGGACGCCTCTTCCTTTCATTGTAGGCAATAAAAAGGAATTGCATACAAAAGAGCCACAACGCCAATCGGCGAGAAGCAGACAGCTGCCAAACCCAACGTGAACTGAGGCGTTTTCCTCTTGATCCGAGTGTGTGTCGGGAGTCGTCGAAAGAGTCATTCCCATATGGGGCTTCAAAGGGGGTCTAAACCCCCCTCTACGCCAGAGCCCGACCTGCAGCAAAGCGGACCGGAGGCTGGAGGGATCCTGGATTCTTGTTTGCAGCCAAAGGTGGCTAGTTTTTTCCCCTTGATATTAGCCATCACTATTGGATACTAAGGACTAAGAACTAATTGGACTAAATGAAGCGAACAAAGGCTTGACGTTCTATCATTTGGAGGATTCAGATGAAGATGAAAATAGGAAAACAGCCATAGGACAAACAGTCATTGACTGACCACATCACAAACAGGCAGGCGCCGGTGCTGATGCTGAGGAGGCTGCGCCGCTGAGAGACGCAGCGGACGGACAGACAAGCTGACGGACGGGCAAGCCACAGGGCCAGCCTGGGTGAATGGTGGCCGGGCGGAAGGACGCGGCGGCAGGATGGCGTCCACGGGCACGCAGATCTTCGCCTTCGTGCTGGCGCTCCTGGGCATCCTGGGCGCCACGGTGGCCACGCTCCTGCCGAACTGGAAGGTGAGTGCGGACGTGGGCTCCAACATCATCACCGCCATCTCGCAGATGCAGGGGCTGTGGATGGACTGCACGTGGTACAGCACAGGCATGTTCAGCTGCACCCTGAAGTACTCTGTGCTGGCACTGCCCGCATACCTGCAGACGGCCCGCACGACCATGGTGCTGTCCTGCGTGCTGGCAGCGCTGGGACTGTGCCTGGCCTCCCTGGGCCTCAAATGCACTCGCTGGGGTGGTGGACGGCGAGCCAAACGTCACGCAGCGCTGGCGGCGGGCACCTGCTTCCTAGCCTCTGGCTTCCTGTGCCTGGTGCCCGCGTCGTGGTACACCAACGAGGTGATCGTCAGCTTCCTGGATGCCAACGTGCCCGAAAGCAACAAGTTTGAGCCGGGCGGCGCAGTCTACGTGGCGTTCGTCTCGGCAGGCTTTCTCTTCGTCGGTGGGTCCATCTTCTGCCTGTCTTGTTCGGGGAAGCGCCATGGCCCTCAGGACCTGATCTTACTCCCTCCGGACAAACTCCTGCtgcagcaacaacagcagcagctgctcCAGCAACAACACCaagagcagctccagcaccaatACTGCTCCCTATCACCGCTGGACAACAAGACTGGCTACAGCCTGCAGGACTACGTgtaaagaagggaaaaaaaaaaacaaacagcctCAGCTAGACACGTGTGAGCGAGGCGCTGCCGTAAAAACGCACAAACCCCTGGCTCTGGCGATTACCAGATGAAAGGGGGAGGTGGACAGCGACTTTGATGCACTCCCTCCTCCCTCTTCTCCCCCTTTTTTCTGATCGGCAAGCACAAGCGGTAGTGGAGGTATTCCCTAAGCAACGTCTTGGAACAGACGGATCGTGAATActgaggcagcagcagcagatctgcTGCGGGGAGAGCGCTGCGGTAGCAGCCGAAGCTGAAAGCAATGACAGAgacggagggagagagagagaaagagagagagcagacgataaataaaatgcagatatCCGGTATCCAAGCAAATCGTATTAAGAGTTCCTTGGGGAGTGGATTAGCTATGAGGAAATCTTTCACTATACCCCATCCCCTTCCCATCCCAATCCCCCTTCCCTTACATCCCATTCCCCAAAGATTAGAAAATGAAAAGCAATCATTTAGCTGCTAACAATCTTTTGGTAACCTCTATTTTAAAGTAAGTCGGCAATATGATGTCTCTTTGAGGCAATAGTACGGGAAAGCCAGTTTGCAAGCCTTTCATGGTTTTCTGGACCTGTCCACTTTGAGTAACAGTAGAACTAATGAAATGTCTTGTCTTATTTTGGTAGCTGATAGAATGATTGATATCCTGCCTAAGCATGCTGACTGGAGCCTGTGCATAATGCAGCAGAATGCCTGGTAGAGAACGAGTCATAGCCACATTGCCTGTGCCtatataaaaagagaaagaaaaaaaatctgtagaaTATTATAGCGCTGGAAttgttttggggggggggttggggggtttGGTAGACGTGACGAGAGAGTGAATAGGGGTTGCTGGGTCAGGTATGAGAAACTCGCACTCTGGTTGGCACATCGAGGATGGGACGTGATGCCTGTACGTGATGAGACACGGACAATCTGACGTGTTGCTGTTCCAACGCTTTCTCATTTAGCCCCCCGCACAAAATcaagctgaggctgaggctgagtgcATGCTGCTCGCTGCTcgctcacccacacacaaacaaaaaaagtgtacaCCCGcgcatacatatacacacactcgaacttacacacacacacacacactgaaagagTGAGCTGCATGTGTGTGCTTTTTACTCGCGTCGCTACTCACTGCCATGGAAACAGAGTCCTGCACCCAAATATGTGTATACATCGTCTGGGGGGCTGTGTCACTCTTTGCACTGCAGGCGGGCACTGTGCTTCTGTTGTCTCACAGTACTggaggctgttttttttctctcaagtCACTCCAGTCCAAAAGGGATCAATGTCTGGAGAGAAAACACCCACTTCACCCCTCTCTCTTGAGGCATGAGGACCAACCCCAGCTGCGCATTCACCTTCATTTGGACATTATCAGCAGCCTGCCAATCAAACAATTCTGCTGCTTTAAAGGAGCTTCAAAGGCTATGCTCAGACTGCCAGGCTGAATactatataacaatattttcggcatatctagattgtatctaGATTGATTTTCGATAGCCTGCACAGGCAGAAACCACATGAAAACACATTTGGAGATGGTTTGAAATGCAATTACAATTGGATTTGTACTGTACGTTAATACTGTGTTATTGTGGTTTGTTGGTGTGGGGCAGTGGATAACATACCTGCCAGTGAGACTGGGGCTCAATTCCctgtctgggtgactgaatgctgtgctacactaATAGCCAAAAGTTcttgggctagactcctaaTTCTAAATTGGCCCACCtctttcatttaaataattactcTTGATAAAAacgtcagctaaatgccataaatgaaAATGTACTAGACGTCTCAATCTGGATGCTATGGACGCTTAAATCAGAATTTTGCGTTTATTTTGCATCACCTGATGGAACAGACTCGACCCTAGCCTACCACAGAGTCTGTAAAAATGTTCCCCagagctttaaaaaagaaattgggAAGCCACCTACCAAGGGACTACATGTTCCCATTGGTTAATTCTTTGCAGATGGCACTGCACAAACACTGCAAAGACAGTGAGGCTGAGCATGTCTACAGCATGGAACTTTGCATTCATTATGTACCTGCAGCAACCTGCATCGCTGAATTTGTCTGTTGCAATGAAAAAGTTTGATCCTGTAACTTTGCGATAGGGCGATTGTTTGAAGGGCCATATGATGCACCTTCTATTCTATTTCTTTGGCTTCCATGTATAAAAGCTACACCAACAGCTTGGCGACTGACACCTATATCAGTACCTAAGAAACCCATGCAGATAGGTTTCTGATGTCTGGAAACACCACTCCAATCTGAATTCAATCTGATCTTACCAGATCACATCTGAAACACAAATCGGTTGCTgtttgcctgcagtctgaacatagcctaaATATAATACTTTAACTCCGTAGATCTTTCAACAAAGATCTTCCAAAGCCGTTATTTACCTAAAAAACACTCTGGACGACTCTGGTTGACTCTGTTTTTCGAGGCAGTGAGGCTGCAGTTTTTCACGCTCTAAGTGTCTTCTATCTGTGATCTGCTGATGTCCACTTTTTACCCAAAACTGCACTTTTCCCCTCGAGATTCGAACATCTATTTTAACTTCCGAATGCGTCAGCAGTACATCTGCTGTCAGATTCCCACCTGCAGCAGACCACTCTTCGTCTCTCAGCGCCATACTGCCATACTCATCCTCAGTCTGTTTTTCCTGGCTGGATGAGTGCATATGGATGCTGCCTCATGCAGCCAGGAAGGAACAGTTGCATGCTGTAAGCACGTTTTGCAGTGCATGTACACACTCGATATTCGCGATTTCACAACTCCCGTgcctgtgtgcctgtgtgtgtgtgtgggtgtatgtgtggGATGGTGTGTATGCTGGGTTTTGAAGCTACTGTAGTCATGCTTCTCTTCTTACTTTGCTGAGGGGAGGAATGCATCTCCCATGTTGCTGCTCTGCTCTGGCAAAGCAAGCTTTGGCAGTGACGGATGGCACAGTGCATTCTTCCTCTCAAACAGATTCCCCACGGGTGAGCAGATGGCTAGGCCCAGCTCGCCCCCTGCAGGCAGCCGTGGGCATGCTGAGTGGGCACGGCTGAGCGCCGCACTGCCCTTCTGGGGCGGATTAGCCCACCCTTCAGCCAACAATGTCAGCACCTGGGCCATGATAACTACCCCATGCACCCGTTACTCAATGCAATAAGTACCCCTCCTCCCCCCTCATGTTAACCATACACTGCCATGTTTCATTTGAGAATGTGCCAAATCCATGTCTATTTTTGCAATATGTATCTATATGTACTGTGTTCTGCTTGCCAAATGACTGAAGTGATGAAGGTAATATGATTATGATTTAAAGGATCGTCCTCTGTCCTGTCAGGTACGGAAAGATGGATGTTTACATAGCACCAACATGATGACCAATTCCAGGTTTTTTCGTTCTATTCCGAGACAGTCATTCCAtcataaactaaaaaatgtttgtGTCGACTAGGAGAGGCTTTAAAGATTCAGgatatttaaagaaatgttttccATGCTTTGGGATTCCTTTTTACGTACATTCCACAAAGCAGTATTTATCGCCAATTTGGCAGcttgttattttgttatcttCTGTGTTCTAATCTTTTTGGTTTGTTCGAGAGAATATTATGCAGTTCTGATCTCAGTTCCAACACCCAGGCATGTTTATAGTGAATCTTCTTTATAAGAAGACAACACATTTTACACCTTTTCTTGTGTAACCCCATTTTACTGCGGTTTTATTTTGGTGAAAcattgagaaaaagaaaaaaaaacaacaacacaaagaAAGGCAGATGAAATGTAAATAGTACTAGTGTGGAGAGAATGCAAATTTTCGTCTGGTAAAGTGTACCAGTCTAAACTAAGagtatatatattacagtgtaGCTTGTTATTATTAGCACATTATAACATGAGCTTCAAGTGGCCTAAGCAAAACAGAGCGGCCCCTGGTTCTGTTTGGTGACAAATTCTAATGGTTCTCAATTGGATAACTGCAGCTAATTCTTTTCGTGGACGCTTCAGCACTTTTTGATTTTGCAGAGAATCgaggtttaaaatgtttatctaCTGTTGTTTCAGTCTGCTTGTGCAAgtagttatattttttattaataaaactattttGTGGAAGCAACA

Function

GO: NA

KEGG:

id description
K06087 CLDN; claudin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115633 lncRNA downstream 20566 35201480 ~ 35300903 (-) True G85884
TU115505 lncRNA downstream 553785 34766827 ~ 34767684 (-) False G85777
TU115508 lncRNA downstream 553785 34766827 ~ 34767684 (-) True G85777
TU115513 lncRNA downstream 585894 34732539 ~ 34735575 (-) True G85781
TU115514 lncRNA downstream 592325 34726545 ~ 34729144 (-) True G85782
TU115678 lncRNA upstream 37587 35375049 ~ 35380580 (-) True G85915
TU115685 lncRNA upstream 206490 35543952 ~ 35544426 (-) True G85922
TU115689 lncRNA upstream 217398 35554860 ~ 35555189 (-) True G85926
TU115691 lncRNA upstream 239474 35576936 ~ 35579100 (-) True G85927
TU115731 lncRNA upstream 266916 35604378 ~ 35605763 (-) True G85955
XM_022673204.1 mRNA downstream 126139 34870145 ~ 35195330 (-) True LOC103041141
XM_022673205.1 mRNA downstream 141258 34870145 ~ 35180211 (-) False LOC103041141
XM_007248454.3 mRNA downstream 454395 34799139 ~ 34867074 (-) False zdhhc14
XM_007248453.3 mRNA downstream 454395 34799139 ~ 34867074 (-) True zdhhc14
XM_022673201.1 mRNA downstream 849864 34274516 ~ 34471605 (-) False daam2
XM_022673212.1 mRNA upstream 10722 35348184 ~ 35510745 (-) False tiam2
XM_022673209.1 mRNA upstream 10722 35348184 ~ 35510744 (-) True tiam2
XM_022673211.1 mRNA upstream 10722 35348184 ~ 35510743 (-) False tiam2
XM_022673210.1 mRNA upstream 10722 35348184 ~ 35464580 (-) False tiam2
XM_022673213.1 mRNA upstream 219746 35557208 ~ 35600287 (-) True scaf8
TU115663 other downstream 26435 35288232 ~ 35295034 (-) True G85902
XR_002650389.1 other downstream 1308907 33955389 ~ 34012562 (-) False rbks
XR_002650288.1 other downstream 1382768 33938460 ~ 33938701 (-) True LOC111193148
TU115290 other downstream 1481840 33834012 ~ 33839629 (-) True G85618
TU115204 other downstream 1802798 33509680 ~ 33518671 (-) True G85550
XR_001518670.2 other upstream 1254171 36591633 ~ 37101581 (-) False nrxn3
XR_002650394.1 other upstream 1254171 36591633 ~ 37087931 (-) False nrxn3
TU116404 other upstream 2645412 37982874 ~ 38069052 (-) True G86432
TU117171 other upstream 5195906 40533368 ~ 40536334 (-) True LOC111193261
TU117264 other upstream 5426630 40764092 ~ 40770471 (-) False LOC103044865

Expression Profile