RNA id: XM_022673211.1


Basic Information

Item Value
RNA id XM_022673211.1
length 5775
RNA type mRNA
GC content 0.55
exon number 27
gene id tiam2
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 35348184 ~ 35510745 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCCTCCCCGCGCGCGGAGCGAGCAAGGAGGGATTCCCGGTTTGCGGCGCGTGCGGAGAGTTTCAGACTCTTTATCCTGCTGGGAATCAGATAATAGCAGATAACAGGAGCGTCTTCACGCGCGCGCGGAGTTACAGAGGCGCAGAGTGGTTATAATGTtttggagagaaaagagaagccggagagagagagaggagctgagCTGTTAGACAAAGAGTTGTGGATGCCCTCACCAGATCTTGATTGCCAGCTGACCTGGAAGAAGATGATGAGCGTTCAGTCTGCAGGATTTCTGTAGGAGTTTAAAGACACAGGAATGGGGAACACAGAGAGCCAGTACAGCGTTCAGGGGTCCAGGAGTAACGGCTTCGTCTTCCCTGGCAGACAGAAGCCCTATTCATTGAAGTTTCGCTCCACCAAGGAGGGAGGTTTATCAACTCATGGTTGGTGGAGGGTGGGATCAGGGGTTTCTGGTTTCAAATCCAGAGCTATGGCTCGTGGATGCCTGTCTCAGTCCAAGAGCCACCCGGCGTACATGTCTCGTCATTATGACTACGTCACCAATGGAAATGAGGTGAAGAGAACCAGTGACCAGTGCAATGGTTCTTCTGAATGCTTGCCGTCAAGAACACCGTTGGTTCTTCCTTTGGAGAATGGCTGCCAGGAAGGACCCAAGGAAAATGGGCACAGCAGGTATGAAAAGGGAGACTGTAATGGCCATACTGGGCATAATGAGTTGACTGGGTACAAGACCCCCGAGCGGAAATCTAGGTTGGAGGTGCTGGAGGAGCAGAGCAGCAGCCCCAGGGTCGTAATCAAGAGCGACGGCAGCGTACGAGTAGAGTTCGCAAATGTCGCCAACAACTCCAGGCTGCTTCCAGACCAGTACACTGGACCAGTTCAGCTGCTGAAGTTCTCTCCCACAATGGACTCCTCCTCTTCCTTGCCCACTTCATCTACAGTGCCTCTACATGTTTCTGAACATCTTGACCATGGTTCTGCACCAGTGGCTGCCAGCTCCACCACAAGAACCAGCAAGGGCAGCTCGTTGAGTTCCGAAGGCTCCTGGTACGACTCGCCTTGGGGAACCGGCGGCGAGTTGAACGAAGACTCTACCTCTCCCAACAGGGTTTCCGAAGCTCTTTCGCCAGTTTGCATGGATTTCTACGATCAACAGCTACCCGGCGTCACGATATCCGATCTCTACCGAGACCCGAGCATCGCTGCCACGTTCCCGACCGCCAAAGATCTGCAGTTTTCAAACGGCACACCTTACAAACACAGGGCTTCTTTTGGGTCTGTGCTGAAAGAACCTGCTGAAGAGGCTTGCAGCGAGGGCCTGCAGTACTCGTCCTTCACCTTACCCTGTCGCAAGTCCAAACCAATCACAGACAGCTCTGGAGCCAAGGAGTCTATCAGGAATCAAATGAGGCGGCTCAGTGACTGGACTGGGAGTCTGActagaaagaagaagaaatcgAAGGAGCCCAGATACAAAGAGCCCGTCGACTGCTTTGACAGTGGTGTCGATGGCCTCACTGCTGACACCAGCTCTCCCTCTCAGGTTTCCAGTCTGCTGTGGTACCCCAAGGCTCAGTCCCGGGCCCGCTCGCAGTCCCAGGCCCTGCCCTCCCGCAGCGATTCAGCCGGCGCTCTGCACATGGACACGGACGCCCTGCGGCAGAACATATACGAGAACTTCATGAGGGAGCTGGAGACCGGTCACACGGGCGCAGGAAGCGGAGGAGAGGAGCGGGAGGAGAACTCCGTGGACGAGACGGAGAGCAGCAGTCAGGAGACGCTGGGATCTCTGGAGCAGCTGGATTTGCTGTTTGAGAAAGAGCAGGGTGTGGTCAGGAGAGCTGGATGGTTGTCCTTCAAGCCTTTGCTCACCCTGCACAAGGACCGCAAGCTGGAGCTGGTGGCCCGGCGCAAGTGGAAACAGTACTGGGTAACACTGAAagGCTGTACACTGCTGTTCTACGAGACTTACGGAAAGAGTTCTCCGGAGCAAGAGATGTTACCGAGCTACGCTTTGCTGGCGGAGGACGGCATAGTTCAGGCTGTTCCCGAGCATCCGAAGAAAGAGAACGTGTTCTGCCTCAGCAATGCCTACGGCGATGTCTACCTCTTTCAGGCCACTAGTCAGACAGACTTGGAGAACTGGGTAACGGCTCTCCACTCTGCCAGTGCGTCTCTGTTTGCGAAGCGTTACGGGAAGGAGGACACCCTGCGTTTGCTGCGAGGGCAGATCCGCGGCCTCCTGCAGAAGATCGACATGGACGGCAAGATGAAGAAGatggctgagctgcagctgtCCATCGTCAACGACCCCAAGAACAGGAAGGCCATCGAGAACCAGATCCAGCAGTGGGATCAGAATCTGGAGAGGTTTAATATCGACCTGTTCCGCATGCGCTGTTACCTGGCCAGCCTGCAGGGAGGAGAGCTGCCCAACCCAAAGAGTCTTCTGGCCACGGCCAGCCGACCGTCTAAAGCTGCTCTCGGACGACTGGGAATCTTCTCCGTCTCTTCTTTCCATGCACTGATCTGCTCCAGAGATGAGGCGACGCTGAGGAAGCGCTCCCTGTCTCTGTCTCAGAGAGGACGCAGCCGGAGGGGGGTCTTCTCCTCTCTGAAAGGTCTGGACAGCCTCACCAAACGCGGCCGTGATAAAAGACCCTCCGCCTCACAGATCTTTGACTGTGATGGAGAACAAATTGGCTATCTTCCTCCTTCTAGCAGTGAGCGGCTGGACGGCCTGCCTGATGTTTACTCTGTAGCACCACCTGAAGGCAGCCAGTGGAACAGCGGCTCAGAGACCCCAGCCTGCGTGAACATGCCAGACTGCCAGGCCGTTACAGTGGCTGTGAAACCCCAGCACTCAGTCACGCAGGTTCTCACGCAGGCCtgcaagATGAGGAACCTCAACCCAAGTCTGCACTGTCTGCGGCTGCGCAGATGTGGTGATGATGGGATGCAGGTTTTTACTCCAGCAGGACATGAGCTGCTGCAGGACTTGTCGTATGATGAGCTGGAGATCAGCCCTCTGAACCTGTGCTCTCTCCGCATGACCAGGCCCTCGAGCACGGGGGACTTCGGGTTCGCTGTCACAGGCCATGTCgacagcctcagaaacagccGCATCTTTGTCACTGAAGTTCTCCCTGATGGAATCGCCTTCAGTGAAGGTCTCAGGCCGGGTGACGAGATCGTGGTTCTGAACGGCTGTGAAGTGTCGTCTCTGGACCTGGTGCTGATCCAGACGCTCTTCAGTGAGCAGACCCTGAATCTGACCATCAGACGAGACCCTCCATCACACAGACATGACTCCGCCTCCTCCTCGCACACacgcagcagcagtagcagccaGCAGCAGCTACTGAAGGACTTCCTGTATCGCCATCACAGAGCCAAGTCTGTCACAGATGTGTCCTGCGTGGGAGACGGAGCGGCTAAAGCTGTAGAGAATGGCCTGCAGCACCCCCACCACAGAGCAGTGCAGCACAGCAAGAGCGTGGAGACGGTGTGTACGCTGTATCACTCCTTCCAGGAGGGTTCTGGGGGGCTGATGGAGAGCCAGAAGGAGTCAGCAGGGCCGGAGCCCACCCTGCTTAGACCCTGCCCACGGCACATGTCCGCCACTGAGAGACTGCGCAAGGTCATCCAGGAGCTGGTGGACACTGAGAAGTCCTACGTCAAGGACTTGAGCTGCCTGTTTGAAATCTACCTGAAGCCTCTGCAGAAGGAGACGTTCCTCACACTGGATGAGATGGAGAGCTTATTTGGTAGTCTACCTGAGATGCTGGACTTCCAGAAAGTTTTCTTGCAAACCCTGGAGGAGAGAATAGCTTCATCTCCAGACTTCAGCACTCTGGAAACACCTATGCAATTCAAGAAGCTGCTGTTTTCACTGGGTGGATCATTCCTCTACTACGCCGATCACTTCAAACTCTACAGTGGCTTTTGTGCCAACCACATCAAGGTCCAGAAGGTTCTGGAACGAGCTAAAACAGACCGAGCCTTTAAGGAGTTCCTGGACGCGAGGAATCCAACCAAGCAGCACTCCTCCACGCTGGAGTCCTATCTGATCAAGCCAGTGCAAAGAGTGCTGAAGTATCCCCTGCTGCTGAGGGAGCTGGTGTCCCTGACCGACACGGACAGTGAGGAGCACTATCATCTCACAGAGGCCTTGAAAGCCATGGAGAAAGTGGCCAGTCACATAAACGAGATGCAGAAGATCTACGAGGATTACGGGACAGTATTTGACCAGCTTGTGGCTGAACAAAGTGGTCCAGAAAAAGAGGTCACTGAAATTTCCATGGGAGAATTCCTCATGCATTCCTCTGTGATCTGGCTCAACCCGTTCCCATCCTTGGGTCGTATGAAGAAGGAGCCCGAGCTGACTGTGTTTGTGTTCAAGAAAGCGGTGATTCTGGTCTACAGGGagaacaacaaacagaaaaagaagatgAATGTTCCACGTTCTGCACACTCTCATGGAGGAGATCAGGACCATTTTAAATTTCGCTGGCTCATCCCACTTTCAGCACTGCAGGTCAGACTGGGCAACACAGCAGAAACCAACTGCGTTTGGGAGCTGATCCACACCAAGTCGGAAATAGAGGGCAGACCAGAGACGGTGTTccagctgtgcagcagcATGCCGGAGTGCAAAGTCAACATCGTCAAGGTGATCCGCTCTGTCTTGCGTGAGAACGTGCGGCGAGGCATGAGAGGAAATGTCCAGCTCGTTAATCCAGCTGAGAGAACCTTCAAAGACCGGTTTCCACCTGTGAGGGGAACTCTACCTTCTTCTGCTAAACTCGGTTCCTCTCGAGGTTTCTGGCTCGGCAATAGTAAGCATATAGACGTCTATTCCCTTGCCAAAAGTGACCAGCTGAAGTCCCAACTCCTCGATTCGGATTCAGCCAGCGAGGGAAGTGGGATTcccagcagtggaggaggagctgCACCTAAAAACTCTTCCCATCCTTCATCCATTGGACAAGGCAGCATGAAGGAATCAGACATCCTCTGCGATGAAGAGAACGAATACAGCGAGTGTTTAGGTCATCACGATTCCGATCACAGTTCGGGTTCAGTCGAGGCTCAGTTCCGTGAGCTTCGTCTGTCCGACGTACCACGAGCTCCACGAGTCCAACCTGAAGGAGGAGAAGTAGACACTCCTGAGAGACAACCTCAGCATGAGACTCAGAGCCTGCAGAGACGCCACTTTTGTGCAGTGAAACGCAGGCCAGGTGGAGACGGTAGTAGCTTCAGGCGCCGCCAGGGGGCGCTAGTGACCATGCGGCAGCACAGTCGCTCTCTGGACAGCCAATCGGAATCAGCGGTGGTCAGTGTGGACCTCAATGCCCTGCTGGAGCGAGAGTTCAGCGTACAAAGCCTGACCTCTGTAGTTAATGAGGACTGCTTCTTTGACAATGCCAACGAGAAGCCAGGGAGCAGCAGTACCAGCACTACCGCAGCCACGACTTCATAGCTCACCTGCACCTGACCTGCTGACCGGCTTCAAAAGACTTCCGTCGGCTCAGTGATCAGGCAGGCCGACGCTTTAAGGTCCACCAGGATTTAACCGTGCCTGGAGAAGACGACTCCGCATGTCTCCAGACATCAAATCTACACTGAATGTCATCTGGCTGTGTGCGAGTATGACCTCGTCTTCAACCTTGCCTGTCCTTGCGTGGCTGGCAACTGAGGAAAGGGTAACttcaatgaaaatgaactgATTCAAAGaaagctagaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115667 lncRNA downstream 16505 35331081 ~ 35331679 (-) True G85906
TU115633 lncRNA downstream 47281 35201480 ~ 35300903 (-) True G85884
TU115505 lncRNA downstream 580500 34766827 ~ 34767684 (-) False G85777
TU115508 lncRNA downstream 580500 34766827 ~ 34767684 (-) True G85777
TU115513 lncRNA downstream 612609 34732539 ~ 34735575 (-) True G85781
TU115685 lncRNA upstream 33209 35543952 ~ 35544426 (-) True G85922
TU115689 lncRNA upstream 44117 35554860 ~ 35555189 (-) True G85926
TU115691 lncRNA upstream 66193 35576936 ~ 35579100 (-) True G85927
TU115731 lncRNA upstream 93635 35604378 ~ 35605763 (-) True G85955
TU115751 lncRNA upstream 157020 35667763 ~ 35672891 (-) True G85970
XM_022673208.1 mRNA downstream 10722 35321469 ~ 35337462 (-) True cldn20
XM_007248455.3 mRNA downstream 20890 35321469 ~ 35327294 (-) False cldn20
XM_022673204.1 mRNA downstream 152854 34870145 ~ 35195330 (-) True LOC103041141
XM_022673205.1 mRNA downstream 167973 34870145 ~ 35180211 (-) False LOC103041141
XM_007248454.3 mRNA downstream 481110 34799139 ~ 34867074 (-) False zdhhc14
XM_022673213.1 mRNA upstream 46465 35557208 ~ 35600287 (-) True scaf8
XM_022673215.1 mRNA upstream 96343 35607086 ~ 35632755 (-) False LOC103042065
XM_022673217.1 mRNA upstream 96343 35607086 ~ 35632755 (-) False LOC103042065
XM_022673216.1 mRNA upstream 96343 35607086 ~ 35632755 (-) False LOC103042065
XM_022673214.1 mRNA upstream 96343 35607086 ~ 35632755 (-) True LOC103042065
TU115663 other downstream 53150 35288232 ~ 35295034 (-) True G85902
XR_002650389.1 other downstream 1335622 33955389 ~ 34012562 (-) False rbks
XR_002650288.1 other downstream 1409483 33938460 ~ 33938701 (-) True LOC111193148
TU115290 other downstream 1508555 33834012 ~ 33839629 (-) True G85618
TU115204 other downstream 1829513 33509680 ~ 33518671 (-) True G85550
XR_001518670.2 other upstream 1080890 36591633 ~ 37101581 (-) False nrxn3
XR_002650394.1 other upstream 1080890 36591633 ~ 37087931 (-) False nrxn3
TU116404 other upstream 2472131 37982874 ~ 38069052 (-) True G86432
TU117171 other upstream 5022625 40533368 ~ 40536334 (-) True LOC111193261
TU117264 other upstream 5253349 40764092 ~ 40770471 (-) False LOC103044865

Expression Profile