RNA id: TU95425


Basic Information

Item Value
RNA id TU95425
length 1818
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G70738
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2945157 ~ 2946974 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCTGATAGCtgtcatgatttttctttataaattactggttgttcagatcagcaatttcaatcacatatatcatatagcagataaacacagtgatatttaagaagagaaatgcaataattctttaaactaaattaggcaggtgcataaatttgggcaccctacaagcttcctatagcttccaatgaaattcttctttacaaaacatctccagttcagtcaggtttgatggtttctgagcaagAAAAGccagctttaaatcacaccacaggttttcaataatattcatatcatatgactatgactgttctcaccatccttcagAAATCTCTGAAAGCATTtttatccttcctctaaaccatggtgttgaacagtctttgttttcagatcatttgagagttgtgatTTGAGGATCCCATTTTGCCGCTCTTATGAGGACTAGTAAGGCCCTCATAATAAGGGCTAACGTTTCGGTGGCACTCCATCAATGTCCATCAAACATCTGGGAGTGCAAACCCACTAGACAGTTCTGGAAGAGCAGTGCAGAGCAGCTTTGGATTCAGCATTTCAGAATATTGGCTCTGAAAAGCTATAGTGTAGAACAGTCTGACTCCCTCAGATGTATTAtctctgtttataaataagggttaatctacagttacagtagatacagaagtATCAGCACAGTAATCAGATATACTTATACTGCTGTATGAGATGCCAATTGAAGAGGAGTTGAATTTTGACACAACacctgttctttttcttcttctattgtttaacagGTTACAATAGCCTGCCTCAAAAGTCAGAACAAAAAATCTGCAAAacagtgctttcacactgcaaatgaaCCAGACCATGGATTAATTGACCTGGATAAATTCACTGAGaccaaattgtaaaaaaaaaaactgtggttcACAGCAAGTTTCACACCTGCtttaatggataaaaaaaacctaaaatgtCTAAAGGTCCAGGAAAATAACTTTTGCCATGCCTAATGTAGAGATGTAGGCATGGGGCACCATCATGTAGGCATGTGCAGTGATTCAATGCTGAACAAGGGTTTCTGAGCAAGAACTCACACCAAACTGTGCTGTGCTGATCAGTAATGCACTGGATTAACTTGATACAAATGATGTATTACACATATTACACCAAACATGTAATTATTAAGcagttatataatttattattattatagaactgTAGAAATGATGAGCAGAATCCAGTGCATCACTTTTCCTCTGGAAATCCACcttcacacatactgtacacattcAGATCTCTGAGGACTCAATCCTTTCGATCCAGGGAAGACCTGAAGGCtgtttctcctcttcctctgaaGCCCCGCCCCCATTCGCATCCGCTCCACCCACTCCCCCTCTGAGCAGCATCAGTTCTCTCTCCAGGCTCTCGTTCTTGTGGTACATCTCCAGGTAGCTGGCCTGCAGCTCTCTCTGGTAGCGAATCACCTTCTCCTTCTCCAGCTGCCAGGTGTTCCTCTCCGCCTCGAAGGCGGAGGCCTGGGCCTCGCTCTGCCGCCGCTCCAGCAGCAGCTCCGCCCTCAGACGCTCCTCCGTGGCTCTGGACTGCTGGCTCTCCTGGGTCGGCTGGCCGTCGTCGAAGGCGCCGCCCTTGCGGCGCTCGGACTGCAGGGCCAGCTGCAGCAGATCCAGCTGTCGGTCCCTGTCCTTCACCTCGCCCCGACTCTCCCTCAGCTGAGTCTTCAGCAGGAAGATCTCACTCAGCTTCTGCGTCACCTCGGCCTGAGAGTCCCTCAGCTGCTGCTTCAGCAGGGAGATCTCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95423 lncRNA downstream 1550 2943353 ~ 2943607 (-) True G70736
TU95422 lncRNA downstream 3521 2941053 ~ 2941636 (-) True G70735
TU95420 lncRNA downstream 24772 2920042 ~ 2920385 (-) True G70733
TU95417 lncRNA downstream 62192 2882482 ~ 2882965 (-) True G70730
TU95415 lncRNA downstream 65033 2879924 ~ 2880124 (-) True G70728
TU95467 lncRNA upstream 467 2947441 ~ 2949903 (-) True G70770
TU95468 lncRNA upstream 4599 2951573 ~ 2951917 (-) True G70771
TU95466 lncRNA upstream 7638 2954612 ~ 2956174 (-) True G70769
TU95495 lncRNA upstream 136002 3082976 ~ 3083205 (-) True G70795
TU95510 lncRNA upstream 163831 3110805 ~ 3115995 (-) True G70809
XM_022671952.1 mRNA downstream 128622 2775243 ~ 2816535 (-) False anxa6
XM_022671950.1 mRNA downstream 128623 2764145 ~ 2816534 (-) False anxa6
XM_007257737.3 mRNA upstream 11675 2958649 ~ 2982646 (-) True rmnd5b
XM_022671901.1 mRNA upstream 35073 2982047 ~ 3019753 (-) True LOC103025117
XM_007257736.3 mRNA upstream 76445 3023419 ~ 3027693 (-) True LOC103047641
XM_007257732.3 mRNA upstream 351236 3298210 ~ 3317552 (-) False tmem65
XM_022671966.1 mRNA upstream 351236 3298210 ~ 3317552 (-) True tmem65
TU95334 other downstream 200085 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 400826 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 822187 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 1464974 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 1935196 4882170 ~ 4884488 (-) True G71235
trnaw-cca_42 other upstream 1977026 4924000 ~ 4924071 (-) True trnaw-cca_42

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_03962507_03966711.mRNA True 2132 mRNA 0.51 4 CI01000000 3962311 ~ 3966796 (+)
rainbow trout (Oncorhynchus mykiss) TU1410460 True 2027 lncRNA 0.42 2 NC_048578.1 29969231 ~ 29971305 (+)
bowfin (Amia calva) AMCG00011501 True 1956 mRNA 0.61 4 CM030133.1 27415188 ~ 27423491 (-)