RNA id: CI01000000_03962507_03966711.mRNA


Basic Information

Item Value
RNA id CI01000000_03962507_03966711.mRNA
length 2132
RNA type mRNA
GC content 0.51
exon number 4
gene id CI01000000_03962507_03966711
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 3962311 ~ 3966796 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAAATAGAACCAGTAAGTGAAATCTGAAATGTGTCCAACTGTTGGATGGTAACAAAACATCTTGAAATATCAGAATATTTGGCAGAAGAAGGATTCAGGTTTCATATTTGATTATCTGAAAGGTTTTTCATTGTTTTTCCTTTCTCTTCCTTTAATTTAGAGATCTCAGTGGAGCTATTTGAACTTGTAACCAATGGCAACAGCCCAGGCCCTGTCCTTGAACCAGGACCCCAGCAAAAGCATCTGTGCCGTTTATCCAACATCCTCTTTGGCATCAGGTCACTGCGTCATGGGAAGTGTAGGCAGCCTAATTGAGAAACCAGACGTGTCACCAACCAAGAGTAATAGAGCAGTTCCACAAGTAGCAGGACGTCAGAACCACGGCCTGCTCAAGAAGGGTTTCAACCAGAGAGAGCTGCTCAACTATTTGAACATAACCAAGAAGGAAGCAAAGGGCAGCAAACACATCATCTCTGGAACATCCTCCATCAAGAGAGAGCACAGGAGAGAGGAGAACGACGTCTACACTAAGATCTACCACCGGGATGGAAAAGAGCTTGATTTGGGAAAGAACTCACTTCCCATAGGTGGCAAGTTTGACAAGCCACGTTTCAGGCCTTCCGCCTTTAAACCGGTCACCCCGAAAAACTTCAGTTCCATGCAGAACCTCTACCCTTCCAAGTCGGAGGAGCTAGAGAGTGGCTTAACCAACGGCATGCATCCATCCTACACCAAAGCAGCACCTAAATCATTGTCCACCTCTTCCTCGTCCTCCTCCCCTTCGCGGCCAGGCACGAGCACCAGCAAAGGCGTGCTAGCAGCAGTCCGGGGCCTCAGCCAAGAAGAGGAGAACACGTCTGACTCGGGGCACAACTCCATGAACAGCCTGCCGCCATATCGGCCACCGTTCCGACCTCACTTGGGACAAATCAGCGCCTCTATGGGGCACATCAACCACATTGGCTCACTGGATCGCACCTCGCTGGGCTCCAAGGGAGCCGCTTCCACAGTCACAGACGTGTCCTGTCAGAGTATGGCTACGCTGAACCGCCTGCAGTGTTATGGAAGCGAGGCCCCGCCCCCCTACGAGCTGTCACACTCTCTGGAGGACGTGGTGAAGGACCTGGAGGAACGTCTGCAGGAAAAGGAGCACGAGCTACGTCAGATGAGGAGGAACTTGGATGAGAGCGAAGATGCCATTGCACAGGTTTTTGAAGGGAAGCAGCGGCTCTGGGAGAAGGAAGTGACAGAACTAAAACACTTGTACACCGCCAAACTGCGTCAGGTATCCCAGCAGTCCCAGCGTTCACAACGAAATCTCCAGCTGCAGCTGTATAAGGTACAGCAAGAACGCAACCGGCTGCAGGAGGAGCTGGATTCTGTCAGGCTGGAATGCCAGACCCTGAAAAGTCAAAGCCCAGCGGGACAAAGCCAGAACATTAATCCCCAGCTGGAAGAGACCCAGTGGGAGGTCTGCCAGAAGTCAGGAGAAATCTCTTTACTGAAGCAACAGTTCCGGGACTCTCAGGCAGAGGTCACACAGAAGCTGAGCGAAATCTTCCTCTTAAAGACTCAGCTGCACGAGGCACGTAATCAGATCCGGAGCAAGGACAGCCAGATCGACATGCTACAGATGGCCCTACAAGGTGCCCGGCGGAAATGCCCCTTGCCTGCTTTCGAGGAAACTCGAGTGGATGCGGGTGAGACTGGAGGAGCCAATTCCACAGAGGAGCGTCTCAGAGCTGAACTGCTGCTGGAAAGGCGCCAGAACGAGGCGCAGAATTCAGCTTTTGAAAATGAGAGAAGAACATGGCAGAACGAGAAGGAGAAGGTGATACGGTACCAGAAGGAACTGCAGGCCAGCTACCTGGAGATGTACCACAAGAATGATGCCTTAGAGAAAGAACTGGCATTGCTAAGAGGGGGCAAGGCCAGAGTGGAAGAGGTGGGAGCAGGGACCGGAGATGAGGGCTGGGCTTTACAGGAAGCAAAGCCACCCACTGGTCTGCCCTGGATAGAGAGGATTGAGTCCTCTGAAATTTGACTTTGCAAATGTTCTTCAGCATCTGAGATTTGATTGACGACAACAGCTCTGGATCCTAACCTGAGTTTCACTTCTGAGACAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2562 lncRNA upstream 86615 3872440 ~ 3875696 (+) False G2293
TU2563 lncRNA upstream 86615 3875230 ~ 3875696 (+) True G2293
TU2557 lncRNA upstream 92065 3854191 ~ 3866427 (+) True G2288
TU2556 lncRNA upstream 92065 3862716 ~ 3866427 (+) True G2288
TU2625 lncRNA upstream 134336 3827698 ~ 3827975 (+) True G2354
TU2657 lncRNA downstream 17668 3984464 ~ 3984820 (+) True G2385
TU2558 lncRNA downstream 109731 4078113 ~ 4078421 (+) True G2289
TU2565 lncRNA downstream 123639 4090435 ~ 4092402 (+) True G2295
TU2564 lncRNA downstream 151788 4118584 ~ 4119862 (+) True G2294
TU2672 lncRNA downstream 178193 4144989 ~ 4147823 (+) True CI01000000_04138020_04144928
CI01000000_03930421_03932454.mRNA mRNA upstream 29098 3930421 ~ 3933213 (+) True CI01000000_03930421_03932454
CI01000000_03919871_03926839.mRNA mRNA upstream 35400 3918234 ~ 3926911 (+) True CI01000000_03919871_03926839
CI01000000_03864153_03869858.mRNA mRNA upstream 92085 3864153 ~ 3870226 (+) False CI01000000_03864153_03869858
CI01000000_03724666_03729920.mRNA mRNA upstream 232268 3724100 ~ 3730043 (+) True CI01000000_03724666_03729920
CI01000000_03630643_03637287.mRNA mRNA upstream 324235 3630591 ~ 3638076 (+) True CI01000000_03630643_03637287
CI01000000_04019072_04022985.mRNA mRNA downstream 52276 4019072 ~ 4023055 (+) True CI01000000_04019072_04022985
CI01000000_04027941_04033360.mRNA mRNA downstream 61041 4027837 ~ 4033822 (+) True CI01000000_04027941_04033360
CI01000000_04036979_04044427.mRNA mRNA downstream 70183 4036979 ~ 4044770 (+) True CI01000000_04036979_04044427
CI01000000_04076566_04077988.mRNA mRNA downstream 109222 4076018 ~ 4078074 (+) False CI01000000_04076566_04077988
CI01000000_04082293_04087343.mRNA mRNA downstream 115497 4082293 ~ 4088019 (+) True CI01000000_04082293_04087343
TU678 other upstream 2053503 1815453 ~ 1908808 (+) False G579
TU531 other upstream 2529457 1425121 ~ 1432854 (+) True G435
TU431 other upstream 3285374 671842 ~ 676937 (+) True G350
TU325 other upstream 3455239 503209 ~ 507072 (+) True G252
TU3086 other downstream 486982 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 759190 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 6238035 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 6460427 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 7011693 10978489 ~ 10980872 (+) True G7018

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015909 True 1435 mRNA 0.55 4 NC_007125.7 49264184 ~ 49286773 (-)
grasscarp (Ctenopharyngodon idella) TU95425 True 383 lncRNA 0.45 2 CI01000013 9439441 ~ 9439916 (-)
bowfin (Amia calva) AMCG00011501 True 1956 mRNA 0.61 4 CM030133.1 27415188 ~ 27423491 (-)
mexican tetra (Astyanax mexicanus) TU95425 True 1818 lncRNA 0.45 1 NC_035904.1 2945157 ~ 2946974 (-)