RNA id: TU2657


Basic Information

Item Value
RNA id TU2657
length 357
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G2385
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 3984464 ~ 3984820 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATACAGGTGCTGGTCATATAATTAGAATATCATCAAAAAGTTCATTTTTTTATTATAAATTATTTTTAAACATGAAACTTTCATATATTCTAGATTCCCTACATGTAAAGTAAAACATTTCAAAAGTTTTTTTTTTAAATTTTGATGATTAGAGCGTACAGCTCATGAAAGTCCAAAATCCAGTATTTCAAAATATTAGAATATTTCCTAAGATCAATCAAAAAATGGATTTGCAAAACAGAAAAGTTCAAGTTCTTTAAAGTATGTTCTTTTGTGCACTCAATACTTGATCGGCAGGACATATTACAGCAAATGACTTGCTCCTAGCACAAATTACTGCATCAGTGAAGTGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2562 lncRNA upstream 108768 3872440 ~ 3875696 (+) False G2293
TU2563 lncRNA upstream 108768 3875230 ~ 3875696 (+) True G2293
TU2557 lncRNA upstream 114218 3854191 ~ 3866427 (+) True G2288
TU2556 lncRNA upstream 114218 3862716 ~ 3866427 (+) True G2288
TU2625 lncRNA upstream 156489 3827698 ~ 3827975 (+) True G2354
TU2558 lncRNA downstream 91707 4078113 ~ 4078421 (+) True G2289
TU2565 lncRNA downstream 105615 4090435 ~ 4092402 (+) True G2295
TU2564 lncRNA downstream 133764 4118584 ~ 4119862 (+) True G2294
TU2672 lncRNA downstream 160169 4144989 ~ 4147823 (+) True CI01000000_04138020_04144928
TU2694 lncRNA downstream 207304 4192124 ~ 4192354 (+) True G2420
CI01000000_03962507_03966711.mRNA mRNA upstream 17668 3962311 ~ 3966796 (+) True CI01000000_03962507_03966711
CI01000000_03930421_03932454.mRNA mRNA upstream 51251 3930421 ~ 3933213 (+) True CI01000000_03930421_03932454
CI01000000_03919871_03926839.mRNA mRNA upstream 57553 3918234 ~ 3926911 (+) True CI01000000_03919871_03926839
CI01000000_03864153_03869858.mRNA mRNA upstream 114238 3864153 ~ 3870226 (+) False CI01000000_03864153_03869858
CI01000000_03724666_03729920.mRNA mRNA upstream 254421 3724100 ~ 3730043 (+) True CI01000000_03724666_03729920
CI01000000_04019072_04022985.mRNA mRNA downstream 34252 4019072 ~ 4023055 (+) True CI01000000_04019072_04022985
CI01000000_04027941_04033360.mRNA mRNA downstream 43017 4027837 ~ 4033822 (+) True CI01000000_04027941_04033360
CI01000000_04036979_04044427.mRNA mRNA downstream 52159 4036979 ~ 4044770 (+) True CI01000000_04036979_04044427
CI01000000_04076566_04077988.mRNA mRNA downstream 91198 4076018 ~ 4078074 (+) False CI01000000_04076566_04077988
CI01000000_04082293_04087343.mRNA mRNA downstream 97473 4082293 ~ 4088019 (+) True CI01000000_04082293_04087343
TU678 other upstream 2075656 1815453 ~ 1908808 (+) False G579
TU531 other upstream 2551610 1425121 ~ 1432854 (+) True G435
TU431 other upstream 3307527 671842 ~ 676937 (+) True G350
TU325 other upstream 3477392 503209 ~ 507072 (+) True G252
TU3086 other downstream 468958 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 741166 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 6220011 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 6442403 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 6993669 10978489 ~ 10980872 (+) True G7018

Expression Profile