RNA id: TU531


Basic Information

Item Value
RNA id TU531
length 2622
RNA type TUCP
GC content 0.30
exon number 14
gene id G435
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1425121 ~ 1432854 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAGACACTGTGCTGCTTGAGTTCCTGCAAGAACTGAGAGAAGGTTCATTGTTTTTCTTTACCAAGGTAAGATAGTATCCGGTTCCCAGTTGAGTTTTCAGAAACAGCGAAGAGCCCACACAACAAAGCTTTCCATGGGAGATGATGGCAATGCGATCACCCAGAATGTCTGCTTCATCCATATGATGGGTGGAAAGAAGGATAGTCCGACCAGCACGATACTTCAGAAGAAGATCCCAGATGCCTCTACGAGCGTATGGATCCACACCAGCGGTAGGCTCATCCAGAATGACAACCTTTGACCCTCCAACAAAAGCAAGGGCTACAGAGAGTTTCCTCTGCATACCACCTGACAACTGGCTGGTCCTGGATTTGCGTTTGTGTGGAAGGCCAGTATCAGTCAGGATCTGCTCCATCTCAGCCTTCACTTTCTCCTCAGACAGACCCTTTAGACGGGCGTAGAACCAGATGTGCTCTTCTACTGTCAACATGCTGAAGAGGACGTTGTGTTGTGGACACACTCCGAGGCTCTGCCTGATAGAACTCAGCTCTGAGCGAATGTCTTTGCCCATGATATACGCAGTGCCAGAGGTGGGAGGGAAAAGGCCAGTTAAGATAGACATGGTCGTAGTTTTTCCAGCTCCATTGTGACCTAGAAACGAGGTTATCTGCCCCTCATAGAAGCCAAGTGTCAACCCATCGACCGCTAGCTTTTTGCCGTGACTGTAGACCTTCACAAGATTGTCAATGTAAACTCCCAATTCAAGATGAGTGGGTTCCTCTTCAATGCAAACAGCCCCAGCATTGCCCTTCTTTCCATGTATTGCAGTATTGTTTGTGCTGTTCTCTCCAAACCAGTAAGATTTAGTGAAGGGGAAGTACCACGGCCTGGGAATGCCGTACTGCCCTGGGAACACGGTCTCAATGTACCAGGTCATGACCCCATACAGGAAGGCATCAAAGTACATGAGGATGAGGCAGGTGGTGAGGTTGTAGTTGTCCTCTTCCATGGGGCTGGAGAAGAGGTTATACCATTGGATGCCCACACCCTGCTCCTCAAACAGTGCAAAATACTCACAGCCAAACCCAAATGCCACTGGAGACAGTAAGCTAGCGATGACTTTGGCGGTGAAGCCCACGTAGTCTTGCCAAGCCACGCACAGCACATAAGGCAGGTAGAGGGTAAAGTAGATAATGCCCCCGCAGGCTGCTGCCAGGTTGGCACGTGCGAACGCTGTACTGATCAGGAAACACTGCATGATGGTTACCACAGCAAATGACACGAGGAAGAGAAAGACTATGCCAGGGTCACTATAGGGCAGGAGATTTCCCATCTTGAGTAGAAGAACCAGCAGGCCTGCACTGATGAGAAGAGGAATGAGGCTGCTGATGAACCAGCTGAACCACAGGATTCCATTGTCCAGTCCCATAATCCTCATGGTCTCCTTGAGTCGGGCCTCCTTCTCGTAGACAACGCCTTTGATGATGATGGCCACCGAATACATCCAGGCCAGAGTCATGAAGAGAGGCATGGAGCGGCTCATAATGCGAAGGAAAATATCATCTACATAACATGGATAAGGCATCTGTTGGATATAAACACCAGTCTTCTCTTTGGTCCCAGTAATTGCTCTGATGATGCTGTGTTCAACTACATCCTGAAGGTAAGTAAATCCTCCCCAAATATACCGCAAATCCTCAAAGGGATCAGCCCTGGGACCAGGATCCCAATACCCATCTTTAATCTTGTTTGTGCGCTCCACGTTGTCGATGTCCATTCGGATCTTGTAATTGACGTGTGGTGGAAGTTCTGAGCTGTTGGGCTGTACGTCCAGGAACACAATTCCCGCCCAGAACTTTCTGTTATCCAGGAGACTCATGGACTCGTTCACCAGTTTCTCCTCTGTGCTTACAGGTTCAAGTTTATCCAAGTTTACACACTCCATGAAACGGGATATGCTCATAATGGCCTGGTCCGTCTCATTGAAGACATCCCGCCACGTAAATGCTGTTCCATGGGGACGTGTATCCTCAGAGTGCTTAGACAAGAAACTGATAACATCCTCCACGTTCCACTGAGTCCCAGCCAACTGGGCACTAAAGAAACTAGCAGTGGCATTGTTTCGAAGAAGCGTCCGCATCAGATCCATTTCTTCACTGTTCTCCATGAAGTTCCAAAACTTTGGTCTGGCTTCTTCCCACATTCCTCCTAAATCTCGTAGAATTCCAAGCTCCTGAAAAGTCTTATTGACCTCATGAATGATCTTCTGTGTTGCAGGGTTATGTGGCGTGTAGAGGATCTTCCCCATCAGAAGAGGTTTTAATGCTCTCCAGATCATCCGAGAGATTGGACTGGCTTCCATGTTCCTCATCAAGTTGTTACAGTATGGAGTTGTGGTATTGTCGTAGATTGAAACCGGTTCGTCATCGCTGTCATTGTGGCTGCCGAACAGCGCCTGGAAATTGCTGTCCTCGTACCAGTTGAGGGATTTGATCTTTAGTCCACCGCCTTCTGGGTGACCACACACAATACGGGACACAGCCTGGTACATCAGGCTTGGTGAGCCGGTGGCGTTTTTGGTCAGAAACAGGATCTCATTTCGCAGATCACTCCAGCTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU618 lncRNA upstream 20987 1403153 ~ 1404134 (+) True G520
TU601 lncRNA upstream 30501 1394342 ~ 1394620 (+) True G503
TU615 lncRNA upstream 32737 1391396 ~ 1392384 (+) True G517
TU614 lncRNA upstream 34463 1390435 ~ 1390658 (+) True G516
TU613 lncRNA upstream 35531 1389309 ~ 1389590 (+) True G515
TU547 lncRNA downstream 25358 1458212 ~ 1458485 (+) True G451
TU524 lncRNA downstream 54370 1487224 ~ 1490347 (+) True G428
TU674 lncRNA downstream 273916 1706770 ~ 1706985 (+) True G576
TU702 lncRNA downstream 300393 1733247 ~ 1734389 (+) True G593
TU679 lncRNA downstream 335063 1767917 ~ 1908159 (+) False G579
CI01000000_01405606_01410241.mRNA mRNA upstream 14618 1405606 ~ 1410503 (+) True CI01000000_01405606_01410241
CI01000000_01347674_01352321.mRNA mRNA upstream 71893 1347674 ~ 1353228 (+) True CI01000000_01347674_01352321
CI01000000_01209256_01229839.mRNA mRNA upstream 194762 1208489 ~ 1230359 (+) True CI01000000_01209256_01229839
CI01000000_01196208_01208022.mRNA mRNA upstream 216764 1196208 ~ 1208357 (+) True CI01000000_01196208_01208022
CI01000000_01176488_01180221.mRNA mRNA upstream 244852 1176450 ~ 1180269 (+) True CI01000000_01176488_01180221
CI01000000_01459294_01485147.mRNA mRNA downstream 26440 1459294 ~ 1485311 (+) False CI01000000_01459294_01485147
CI01000000_01511690_01517631.mRNA mRNA downstream 78836 1511690 ~ 1517719 (+) True CI01000000_01511690_01517631
CI01000000_01680507_01690297.mRNA mRNA downstream 247653 1680507 ~ 1691194 (+) True CI01000000_01680507_01690297
CI01000000_01848610_01851296.mRNA mRNA downstream 414689 1847543 ~ 1851898 (+) True CI01000000_01848610_01851296
CI01000000_01879407_01879559.mRNA mRNA downstream 446553 1879407 ~ 1879980 (+) True CI01000000_01879407_01879559
TU431 other upstream 748184 671842 ~ 676937 (+) True G350
TU325 other upstream 918049 503209 ~ 507072 (+) True G252
TU678 other downstream 382599 1815453 ~ 1908808 (+) False G579
TU3086 other downstream 3020924 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 3293132 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 8771977 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 8994369 10427223 ~ 10433018 (+) True G6820

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00017803 True 6930 mRNA 0.50 48 CM030131.1 23713943 ~ 23748256 (+)