RNA id: CI01000000_04076566_04077988.mRNA



Basic Information


Item Value
RNA id CI01000000_04076566_04077988.mRNA
length 940
RNA type mRNA
GC content 0.39
exon number 4
gene id CI01000000_04076566_04077988
representative False

Chromosome Information


Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 4076018 ~ 4078074 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATATAATGAGATCCTGACTTGGTGCTTCAAACATTTAGAACTGTATTTTACACTAGTTTTCGAATTTTTTCAGTGTTCTAATTTATTCATATAAAAATACATAAAAAGCCAATAAAAAATACTTTTCTGTAATTTGCTTTCAATTTTTTATTCAAATTAATTTTGATAGGGGTGAATTCAGGGTGATTGGCACTTTTTGCCTTTGAAATGACTTGGAGAAAGTGTCCTAATCAACCTGAATTCACCCCTATATTTTGTAGTCCTTAAAGTAAAAAATGTCTTGGTAGTGGTGTAACACTCTATTCTCATTATTTCTCATATTTAAACAAATTAATACTGTATAATGCATGACAGCCCTATACCGGGACATTTTCAATGTTTTCACACACCAACTTCAAAAATACCTCGACTACGATAATCCTTCATGATAGACAAGACTGTCAAGACTTTCCACACCAGAAGGTGGCACTGTCCGTGTCGCTTTCACAGCATTATTCAACACTATTTCTTCAACATATCCCGCCAAACTCTTCACATGTTGCCGCAATGGCGACCCGAGCCAAATCAGGTCGTGGTCGGAAGCGTAAGGCTGATGTAGATTCAGAAGCAGCTGCAGTGGAGGAGAAGAAAGAAAAGCTTGATGGCGCAGAGAAAAAAGATGATGAAGCAGGACAAAGGGTGGTACTCAATCCACAGAAACCTCGGCGGAACAGCTTTGAGGTCACGCTGATGGAGGGAGACAAAGAGATTGTTTTGTGGTCTGGCATTAAGAAGGGTCCTCCACGCAAACTGAAGTTTCCCGATCCTGCTGAAGTGGTGTCTGCCCTGAAAGAAGCACTGAAGAGCAAGTAGAGGTTATAAGGACAGGTGAGAAGATGCATTTTTTTTTTTTTTGCTATTAACTTGTTTTTAACATATTATAGCTTTTGTAAATGGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2657 lncRNA upstream 91198 3984464 ~ 3984820 (+) True G2385
TU2562 lncRNA upstream 200322 3872440 ~ 3875696 (+) False G2293
TU2563 lncRNA upstream 200322 3875230 ~ 3875696 (+) True G2293
TU2557 lncRNA upstream 205772 3854191 ~ 3866427 (+) True G2288
TU2565 lncRNA downstream 12361 4090435 ~ 4092402 (+) True G2295
TU2564 lncRNA downstream 40510 4118584 ~ 4119862 (+) True G2294
TU2672 lncRNA downstream 66915 4144989 ~ 4147823 (+) True CI01000000_04138020_04144928
TU2694 lncRNA downstream 114050 4192124 ~ 4192354 (+) True G2420
TU2701 lncRNA downstream 123104 4201178 ~ 4201401 (+) True G2427
CI01000000_04036979_04044427.mRNA mRNA upstream 31248 4036979 ~ 4044770 (+) True CI01000000_04036979_04044427
CI01000000_04027941_04033360.mRNA mRNA upstream 42196 4027837 ~ 4033822 (+) True CI01000000_04027941_04033360
CI01000000_04019072_04022985.mRNA mRNA upstream 52963 4019072 ~ 4023055 (+) True CI01000000_04019072_04022985
CI01000000_03962507_03966711.mRNA mRNA upstream 109222 3962311 ~ 3966796 (+) True CI01000000_03962507_03966711
CI01000000_03930421_03932454.mRNA mRNA upstream 142805 3930421 ~ 3933213 (+) True CI01000000_03930421_03932454
CI01000000_04082293_04087343.mRNA mRNA downstream 4219 4082293 ~ 4088019 (+) True CI01000000_04082293_04087343
CI01000000_04090995_04093696.mRNA mRNA downstream 12473 4090547 ~ 4093745 (+) False CI01000000_04090995_04093696
CI01000000_04138020_04144928.mRNA mRNA downstream 59946 4138020 ~ 4145030 (+) False CI01000000_04138020_04144928
CI01000000_04149689_04156988.mRNA mRNA downstream 71615 4149689 ~ 4157477 (+) True CI01000000_04149689_04156988
CI01000000_04165348_04197615.mRNA mRNA downstream 87211 4165285 ~ 4197821 (+) True CI01000000_04165348_04197615
TU678 other upstream 2167210 1815453 ~ 1908808 (+) False G579
TU531 other upstream 2643164 1425121 ~ 1432854 (+) True G435
TU431 other upstream 3399081 671842 ~ 676937 (+) True G350
TU325 other upstream 3568946 503209 ~ 507072 (+) True G252
TU3086 other downstream 375704 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 647912 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 6126757 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 6349149 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 6900415 10978489 ~ 10980872 (+) True G7018

Expression Profile