CI01000000_04149689_04156988 (CNOT6B, CNOT6, CNOT6A)


Basic Information

Item Value
gene id CI01000000_04149689_04156988
gene name CNOT6B, CNOT6, CNOT6A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 4149689 ~ 4157477 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_04149689_04156988.mRNA
TGGTCTAGGGATGCCAAAGGAGAAATATGACCCGCCTGATTCCAGGCGGATGTACACTATAATGTCCAGTGAGGAGGCAAACAGTGGGAAAAAATCCATTTGGGATGGGCTTGAAATAACTGGTAATGTTCGGAGTCTCAGCTCGGGCCTTTGGTCGCTCACGCACCTCACTGCTTTGCACCTCAGTGACAACTCCCTGTCACGTGTCCCACCTGAAATTGCCAAGCTGCACAACCTTGTGTTCTTGGACCTGTCGTCCAATAAGATCAGGAGCCTGCCAGCAGAGCTTGGCAACATGGTGTCTCTCAGGGAACTGCTTTTAAACAACAACCAGTTGCGGGTTCTGCCTTTCGAATTGGGGAAATTGTTTAAGTTACAAACACTGGGGTTGAAAGGCAATCCACTCACTCAAGAAATTATGAGCCTCTACCAGGAGCCAGATGGCACCCGGCGACTGCTGAACTACCTTTTGGACAATCTAGCTGGTGCTATCAAGCGCATCCCAACAGAGCAACCTCCATCCAGATCCTGGATTGTGCTGCAGGAGCCTGAAAGGACGAGACCAACAGCCTTGTTAACTGTAATGTGCTACAACGTGCTGTGTGATAAGTACGCCACACGCCAACTCTATGGCTACTGCCCGTCCTGGGCCCTTAATTGGAGCTACAGGAAAAAGTCCATTATGCAGGAGATCCTCAGCTGCAATGCAGATATTATCAGCTTACAGGAAGTGGAGACAGAACAGTATTATAACTACTTCCTTGTGGAGCTGAGTAAACAGGGATATGATGGATTCTTCAGCCCCAAATCCCGGGCCAGAACCATGTCTGAATCAGACAGGAAACATGTAGATGGATGTGCAGTATTCTACAAAACTGAAAAGTTCAGCATGGTGCAGAAACACACAGTAGAGTTTAACCAGCTGGCTATGGCCAATTCAGAGGGCTCGGAGGCTATGTTGAATCGGGTCATGACCAAGGACAACATTGGGGTGGCCGTGTTACTGGAGCTAAAGAATGAGTTAATGGAGGTGTCATCAGGTAAGTCTATCCATGCAATGGAGAAACAGCTCCTACTAGTGGCTAATGCTCACATGCACTGGGACCCAGAATACTCTGACGTGAAGCTGGTGCAGACCATGATGTTCCTGTCAGAGGTGAAGAACATCATAGACAAGGCCTCTCGCAGTCTGAAGCTCTCCTCTGTGTCTGGAGAAACCAACAGTATCCCTTTGGTGCTGTGTGCCGATCTCAACTCACTCCCTGACTCGGGTGTTGTGGAGTACCTGAGCACAGGTGGGGTGGACTGCACACACAAAGACTTTAAGGAGCTGCGCTACAGCGACAGTCTGACCAACTTCAACTGCAATGGCAAGATCAGCACATCTAACGGAAGGATCACGCATGGTTTCAAGTTGAAGAGTGCCTACGAGGACGGGCTCATGCCTTACACCAATTACACTTTTGACTTCAAGGGTGTCATTGACTACATCTTCTACTCCAGGCCACAGCTGAGCGTGCTGGGCGTCCTCGGGCCTTTGGACACAAACTGGCTCCTAGAGAACAATATCAGTGGTTGCCCACACCCTCACATCCCCTCAGATCACTTCTCCCTGTTTGCACAACTGGAGTTGGTCCTGCCTTATCCTCCCCCTCTCAATGGGGTCCACTTACCTGGACACAGGTGGGAGTTGGAATGGTTTGAGCTTAATATGTAAACCAAATTATTTTAGATGTCTCGATTCAGCGTCACTGCTTTTTGCACACTATTGTTTTAACCCGTTCTATGGAGGCAGGCTCTCTTTGTTTCTTTGTATGACAGGCTATGTGAATAATATAAACTGCGCTTGATCTCACTGTGGTTATAAACGGGAGGTTTTTATTAGAAAGGGAGGTTTTATATATAAGAAGACTAACCAGGGAGTCTTTTAACCAGCGATTTGTCACTGTATTAGGTTGAAAAGGATTTCCCATACCTTTTTATCCTCTCATTACACACATCTTCGAAAGATCTGTAGCATTGTTCTTGAGGCTAGTAATGTTCTGACCTAGCCGTAACCACCCCTTACATTGTATCAGAGGGGTCCTCCCAGGTCTTTGTACAAAGTGTAATCAAATGTATTAAGACAAATTTAGGCTTGACTTGATTGTATATGAGCCACATGTAAGAATACTTTTTTTTTTTTTTTTTTCTTTGTTCTTTTGTA

Function

symbol description
cnot6a Predicted to enable poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within gene silencing by RNA. Predicted to be part of CCR4-NOT complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CNOT6 (CCR4-NOT transcription complex subunit 6).
cnot6b Predicted to enable poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within gene silencing by RNA. Predicted to be part of CCR4-NOT complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CNOT6 (CCR4-NOT transcription complex subunit 6).
cnot6 Enables nuclear receptor coactivator activity and poly(A)-specific ribonuclease activity. Involved in nuclear-transcribed mRNA catabolic process; positive regulation of cell population proliferation; and positive regulation of cytoplasmic mRNA processing body assembly. Located in membrane. Part of CCR4-NOT complex.

GO:

id name namespace
GO:2000327 obsolete positive regulation of nuclear receptor transcription coactivator activity biological_process

KEGG:

id description
K12603 CNOT6, CCR4; CCR4-NOT transcription complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_04149689_04156988.mRNA True 2206 mRNA 0.47 12 4149689 4157477

Neighbor

gene id symbol gene type direction distance location
CI01000000_04138020_04144928 NA coding upstream 4659 4138020 ~ 4147823 (+)
CI01000000_04090995_04093696 SCOC, SCOCB coding upstream 55944 4090547 ~ 4093745 (+)
CI01000000_04082293_04087343 NA coding upstream 61670 4082293 ~ 4088019 (+)
CI01000000_04076566_04077988 NA coding upstream 71615 4076018 ~ 4078074 (+)
CI01000000_04036979_04044427 SEPT8.L, SEPT8B, SEPT8, SEPT8.S, SEPT8A coding upstream 104919 4036979 ~ 4044770 (+)
CI01000000_04165348_04197615 NA coding downstream 7808 4165285 ~ 4197821 (+)
CI01000000_04225109_04225608 NA coding downstream 67632 4225109 ~ 4226616 (+)
CI01000000_04355381_04356090 NA coding downstream 197904 4355381 ~ 4356143 (+)
CI01000000_04368179_04392483 NA coding downstream 210362 4367839 ~ 4392990 (+)
CI01000000_04451252_04452143 NA coding downstream 293653 4451130 ~ 4453011 (+)
G2294 NA non-coding upstream 29827 4118584 ~ 4119862 (+)
G2385 NA non-coding upstream 164869 3984464 ~ 3984820 (+)
G2420 NA non-coding downstream 34647 4192124 ~ 4192354 (+)
G2427 NA non-coding downstream 43701 4201178 ~ 4201401 (+)
G2752 NA non-coding downstream 266239 4423716 ~ 4423954 (+)
G2755 NA non-coding downstream 267918 4425395 ~ 4425738 (+)
G2776 NA non-coding downstream 298515 4455992 ~ 4456314 (+)
G579 NA other upstream 2240881 1767917 ~ 1908808 (+)
G435 NA other upstream 2716835 1425121 ~ 1432854 (+)
G350 NA other upstream 3472752 671842 ~ 676937 (+)
G252 NA other upstream 3642617 503209 ~ 507072 (+)
G2774 NA other downstream 296301 4453778 ~ 4454232 (+)
G2850 NA other downstream 568509 4725986 ~ 4726482 (+)
G6811 NA other downstream 6047354 10204831 ~ 10321679 (+)
G6820 NA other downstream 6269746 10427223 ~ 10433018 (+)
G7018 NA other downstream 6821012 10978489 ~ 10980872 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008149 cnot6b coding NC_007125.7 CM002898.2 48734794 ~ 48765262 (-)
bowfin (Amia calva) AMCG00010169 cnot6l,LOC107752360 misc CM030129.1 CM030129.1 17282646 ~ 17295515 (-)