CI01000000_04368179_04392483


Basic Information

Item Value
gene id CI01000000_04368179_04392483
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 4367839 ~ 4392990 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_04368179_04392483.mRNA
ATATAAAAGAGCAGGTGAGTCGGTGCAGCGACACATCGGTTTCGGAAAGCATGTTGTATAATCTTTTCCTTCTTCCTTGCCACCCTCTTTTAAACCCCTTTCTTCTTGTCTGTCTTCGTCTCTTTTTCTCGCTCCCCCTCCCGCAGTCTGTCCATCAGAAATCTCATTATTGTTGGCTGTGTATACATCTCAGTGTCTCATTAGCAGGCTTCCAGAGCGGCAGAGGACACAATGTCTGAACTTCTGTACCAATTTGTCTGCCTCTGTCTCCCTCTCTGTCTGGGAACCGCGTTTCCCACAGTGCATTAGGCCCATCCTTCAGCAAACTGAATAAGTAAAGATGGCTGAGGCACGGGGTGAGAAGTCAAACTGGAGAATCATGGGAATTGAAAAAGGCTCTCTTGAACATTATTGGGACCTCTGTAGTTTGTCTGTTAACGAGATCTATCATGACCATTCTCTTGGGGCACGAATAAACGTGGTGCTAGTTCGGATTGTTTTGGTGGATGCCAAAAAGTCTGTTGCTGGTCACGCTTCATCTGCCTCTCACTGTGACTTAAAAATTCCATTCAGGGATGTGGTGGCCACAGGGAGCACCGGGACATTCCCATCCACGAGTCTCATTGAGCTGGGCAACCCTTCTCAGAGTCTGGAGAATGTGTGTCGATGGGCTTTCGAACAGCAGAGGAAGGACACTAATGATAAAGAATACCACGATCACGCCATCTTTCTCACTCGTCAAGAGTTTGGACCCACGGGGATGCAGGGTTACGCTCCTGTCACAGGCATGTGTCATCCCGTACGGAGCTGCACTCTCAATCATGAGGATGGTTTCTCGTCTGCTTTTGTGGTGGCGCATGAAACCGGCCATGTGTTGGGAATGGAGCATGATGGGCAGGGGAACCGTTGTGGAGATGAGGTGCAGATGGGGAGCATCATGGCCCCACTGGTGCAGGCTGCTTTCCACCGGTTCCACTGGTCCCGCTGCAGTCAACAGGAACTAGGCCGCTACCTGCATTCATATGATTGTCTCCGTGATGACCCGTTCGAGCACACGTGGGAGGAGCTTCCACAGCTGCCTGGGCTGGATTACTCTATGAACCAACAGTGTCGCTTTGATTTTGGGGCCGGATATATGATGTGCACAGCGCTGCAAAAGGTGGGGCCATCAGGAGCCCAGTATCGCTCATTTGACCCCTGTAAGCAGCTTTGGTGTGCTCACCCAGACAACCCCTTCTTCTGTAAGACCAAAAAAGGACCACCCATTGATGGTACCACATGCGGAGATGGGAAGCACTGTTTTAAAGGCCACTGTGTGTGGCTGACTCCAGACATCATAAAACAGGATGGAGGCTGGGGGATGTGGAGTGAGTTTGGCTCCTGCTCTCGCCCCTGTGGAAGGGGACTACAGTTTCGCACCCGAGCTTGTGACAGTCCACGTCCAGCTAACGGTGGACGTTCTTGCTCGGGCCCAAGCTATCAGTTCCAGATGTGTAATTCACATGAGTGTAAGGACCCGTACCATGACTACAGAGCCGAGCAATGTAGCATGATGGACAACAAGTTTGAGTACCAGAATACCTGGCACCACTGGCTGCCTTATGAACACCCTGACCCTAAGCAACGCTGCAAATTGTACTGTCAATCCAAAGAGACGCGAGCTGTAGTCAACATGCAGACTCTGGTGGAAACTGGAACACGCTGCTCCTACAAAGATCCCTACAGTGTGTGTGTGTACGGAGACTGTGAGAAAGTGGGCTGTGATAATGTAGTTGGATCAGCTCTTCAGGAAGACAAGTGTGGCGTCTGTGGGGGAGACGGAACCAAGTGCAAGACTCACAAGTTTAACTTCACCTTTGTAGAGAAGAAAGCTATCAGGAATAAAGCGTCGGGTGATTTCTTTCTCAACGCACATGGAGACTACCCAGAGACGCGCTCAGTTATCGAAAAAGGACTGGAATGGGAGTATGAGAATAAAAACAATAAGGACACCATTCAAACCAATGGCCCCCTGAAAAACGATGTGGTTGTCATGATCCGAATGCATGGATCGGCCAAAGTGAAAGTGTCGATCAAATACATCACTGATAATGACAGACCAAGTGACAGTGCCAATGAGAATAACATGGTTCCTGATAATGCTGTGCCATACTCCTGGGTGGTGAAGAGATGGGCACCTTGCTCCAAGACCTGTGGAGGAGGCATTCAGATGACACGTTATGGCTGCCGTAAGAACACAGAGATGAGGATGGTCCATCGCAGGTTCTGTGAGAAAATCAAGCAGCCTCCGCCCCTGTTTAGAGACTGTTACCTGAGAGAGTGTGCTCAGCCTATCTGGGTGGCTGGAGAGTGGGGTGAATGCAGTAAGTCTTGTGGGAAGACAGGCACTCAGACACGCTCCGTACGCTGCGTCCAACCTCTGGTCGACGACAAGTACAAATCCATCCGCAGTCGTTACTGCAGCGACGAGCGCCCAGAATCTCGCAGAGACTGCAATCGCAACCTGTGCCCTGCTGAGTGGAGGCTTGGCCCCTGGTCACAGTGCTCAGTGACGTGTGGTAATGGCACGCAGGAGAGGCAGGTGCTTTGCCACACCCGTGACAACACCATTGGACTCTGCTTGGACTCCAAACCAGCTGCATTAAGACCCTGCAGAATGGATCCCTGCCCAAGTTCGTATTCCATTTTATGGGAGCACTTCCGACTTCAACAAGCACGGCAACTTCCTGATACAGTGGTTGTCGCGTCACGACCCCAAATCCCCCGTGCAGAGGATGTCAAGTAAAGCGTCTCTCTCCAGCCACGTTGTCGCGCTGCGCTGTCTCAGCTCTCTCAGCTGGATCTTCTCTCTGTCACTCTGCCTGGCTTTACAAGGCAAACTCCCCTGACTGCCTCCCTCTTCTGAGGCTTGCACGCTTCTCTTTTTCCTGGGTGGTGGTCCTCTTTTACGGGGCGTTTCCGATAGGGGGAGGTTTCTCTGTTTCTCTCTCTCTCTGTCTCTCGCTCTATCTCTCTCTCTCCTTTGTGGAGCTCTGTGTTGTGAACGCTGGCCAGTAAGAAATTGTTGACAAAACAAAACATGTAAAAAATTTGGGGGATGTTCGTTAAAGGAGGGGCTTTGTGGTTGGACGGGCAGCTTGCGGAGCTAATGATTGCGCTGAGGTTTCCGCAGGGGCGACGCGTTTGTTTGAATCACTGCCCTCTGCAAGCTGTTTCTATATGGCTCACGCTCTCGAGGCGGACGCTGTTTTACAGAGGCGCCGTCTGAGCTGCAGGTGTGAAGGGGAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_04368179_04392483.mRNA True 3292 mRNA 0.51 19 4367839 4392990

Neighbor

gene id symbol gene type direction distance location
CI01000000_04355381_04356090 NA coding upstream 11696 4355381 ~ 4356143 (+)
CI01000000_04225109_04225608 NA coding upstream 141223 4225109 ~ 4226616 (+)
CI01000000_04165348_04197615 NA coding upstream 170018 4165285 ~ 4197821 (+)
CI01000000_04149689_04156988 CNOT6B, CNOT6, CNOT6A coding upstream 210362 4149689 ~ 4157477 (+)
CI01000000_04138020_04144928 NA coding upstream 222809 4138020 ~ 4147823 (+)
CI01000000_04451252_04452143 NA coding downstream 58140 4451130 ~ 4453011 (+)
CI01000000_04462428_04462831 NA coding downstream 69438 4462428 ~ 4463112 (+)
CI01000000_04547587_04562715 RXFP1 coding downstream 154597 4547587 ~ 4562837 (+)
CI01000000_04576065_04586515 ETFDH coding downstream 183075 4576065 ~ 4586881 (+)
CI01000000_04661351_04667059 NA coding downstream 268361 4661351 ~ 4667087 (+)
G2427 NA non-coding upstream 166438 4201178 ~ 4201401 (+)
G2420 NA non-coding upstream 175485 4192124 ~ 4192354 (+)
G2294 NA non-coding upstream 247977 4118584 ~ 4119862 (+)
CI01000000_04090995_04093696 SCOC, SCOCB non-coding upstream 274487 4090547 ~ 4093745 (+)
G2752 NA non-coding downstream 30726 4423716 ~ 4423954 (+)
G2755 NA non-coding downstream 32405 4425395 ~ 4425738 (+)
G2776 NA non-coding downstream 63002 4455992 ~ 4456314 (+)
G2780 NA non-coding downstream 70549 4463539 ~ 4463768 (+)
G2792 NA non-coding downstream 83567 4476557 ~ 4476765 (+)
G579 NA other upstream 2459031 1767917 ~ 1908808 (+)
G435 NA other upstream 2934985 1425121 ~ 1432854 (+)
G350 NA other upstream 3690902 671842 ~ 676937 (+)
G252 NA other upstream 3860767 503209 ~ 507072 (+)
G2774 NA other downstream 60788 4453778 ~ 4454232 (+)
G2850 NA other downstream 332996 4725986 ~ 4726482 (+)
G6811 NA other downstream 5811841 10204831 ~ 10321679 (+)
G6820 NA other downstream 6034233 10427223 ~ 10433018 (+)
G7018 NA other downstream 6585499 10978489 ~ 10980872 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008144 CABZ01080056.1 coding NC_007125.7 CM002898.2 48305439 ~ 48348973 (-)