RNA id: TU276752


Basic Information

Item Value
RNA id TU276752
length 498
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G203963
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 7767788 ~ 7768285 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCTTGAGGTCGGttacatcatcagtgcacttggtgatgtaggcagagacagtttctgtgtactcctgaatgtctgtggagttgttgtgggtggcagcctctctgaacatattccagtctgttgtgctgaaacagtcctgaagtgcctctgaggaaccctctggccatactcgtacctgcttaagaactggtttggtgactttaaccagtggtctgtaagctggcattagcataatggtgaggtgatcagaggctcccaggtgggggaggggggaggctcggtaggctcctctgtgtgtagtaaagacctggtccaatatgttgtttcccctggttggaaagtctatgtgtttaaaaagtccagaaaacacactctttgggtctgcatggttgaaatctccagccagaatgagaaaagcatctgggtgcgctgtctgctgttcactgatgtactggtacagttcattcagtgcttcactcctcacgctgttgttggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU276737 lncRNA downstream 24216 7708468 ~ 7743572 (-) False LOC107197584
TU276735 lncRNA downstream 24216 7727051 ~ 7743572 (-) False LOC107197584
TU276702 lncRNA downstream 373608 7393814 ~ 7394180 (-) True G203919
XR_002651849.1 lncRNA downstream 727515 7039599 ~ 7040273 (-) True LOC111195828
XR_002651748.1 lncRNA downstream 990675 6773828 ~ 6777113 (-) True LOC111195711
TU276765 lncRNA upstream 73814 7842099 ~ 7842308 (-) True G203976
TU276790 lncRNA upstream 227069 7995354 ~ 7995585 (-) True G204001
TU276808 lncRNA upstream 281175 8049460 ~ 8049949 (-) True G204019
TU276811 lncRNA upstream 297866 8066151 ~ 8066438 (-) True G204022
TU276820 lncRNA upstream 388344 8156629 ~ 8157771 (-) True G204029
XM_022683535.1 mRNA downstream 24611 7456739 ~ 7743177 (-) True LOC107197584
XM_015605382.2 mRNA downstream 24611 7599145 ~ 7743177 (-) False LOC107197584
XM_022683536.1 mRNA downstream 24611 7599150 ~ 7743177 (-) False LOC107197584
XM_022683527.1 mRNA downstream 754108 7004048 ~ 7013680 (-) False LOC111195712
XM_007247479.3 mRNA upstream 461806 8230091 ~ 8246950 (-) True LOC103028028
XM_007247477.3 mRNA upstream 788113 8556398 ~ 8566032 (-) True fnta
XM_022683538.1 mRNA upstream 807685 8575970 ~ 8648702 (-) True snx25
XM_007247474.3 mRNA upstream 884125 8652410 ~ 8667241 (-) True enpp6
XM_007247473.3 mRNA upstream 908837 8677122 ~ 8702281 (-) True irf2
TU276738 other downstream 118902 7624083 ~ 7648886 (-) False LOC107197584
TU276577 other downstream 1163310 6603676 ~ 6604478 (-) False jph3
trnai-uau_43 other downstream 1235259 6532437 ~ 6532529 (-) True trnai-uau_43
trnai-uau_42 other downstream 1236120 6531576 ~ 6531668 (-) True trnai-uau_42
trnai-uau_41 other downstream 1237109 6530587 ~ 6530679 (-) True trnai-uau_41
TU277526 other upstream 2875969 10644254 ~ 10644687 (-) True G204584
TU277652 other upstream 3814915 11583200 ~ 11584074 (-) True G204671
TU278618 other upstream 5965428 13733713 ~ 13739921 (-) True LOC111195729
TU278646 other upstream 6005032 13773317 ~ 13777621 (-) True G205375
TU278710 other upstream 6206392 13974677 ~ 13978450 (-) True LOC103035169

Expression Profile