RNA id: XM_022683538.1


Basic Information

Item Value
RNA id XM_022683538.1
length 5609
RNA type mRNA
GC content 0.45
exon number 19
gene id snx25
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 8575970 ~ 8648702 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCTGGGTCTCCGCCCACGAGTGGCCGCCAGCAGCAGAGTGAGAAACACAGCTGAGTGATTCACAGCGGAGTCAGGAATATGGGGGCATTTCGTGTATCAGTGATCTGTGGCTTTCGGTGGATATTTCGTGACCAGAATGCGAGGATTTGACGCCTTTCTCCGTTATTTTGGGAACTTAATCCACCCTAACTGCGTGAATGAGCGTTACAGGCTTTACAGCGGATAGAGAAACACAGGCGCCCTGATTAAACAAGTAAACCCGGCGGATTAATCCGCGGAATTACTGCGGACTTTTCCCGGTTTGGGAAATTAGTGGGATTGTTTTGAAACGGAGAGATCAGTTAACGTTATATTCGTGTAGAACTTCGCGTTAGATGGACttgcttttattatgaagctgTAGGCACTGTTTACCTGCTTAACCGCACCTTTCTTCTCCATCTGCTCCTGTCTTTTGCAGCTTTCAAGTCTatgtgaacatttttttttattattacgaTATATTGATAACTTAGAAACACTAGACACAAAATAGATACACACAGCATAtagcttagctaggttaacAATGGAGGACATccaagattaaaaagaaaaataaataactcttTTCATATAACCTATGGTAACTAAGCAAAGCTTTTTATTACTAAAACATTTAACTAAGCAACAAACCGCTCTGTTCTGTGTCTATAACTAAACTGACTCTATTAGTAAAAGAGACCACTAGTCTCATTTATCTCAGTGATCTCTGAAAAACGAGTATTCTGATATAACCTAGCTGTTAATATTCCTTTCTGGGTGGAATTAAAGGCAGCTACAGTTTCCcagattttaaataatcattgtTAGCTTAAGCTAATGCCAGCTCTTTCACTTCAGCAGTTTTTTCATGGACTTGGTGTGAAGACAgtttattagctagctagctttttgttaaaataaaaaggatGGGACGCTGTAAGTAACCTGGACCAACACTAGCtccattaattaattagttatatAGTTGGCTAATTAAATAATTGCTGAGAAATGTGTAGATGGCTCGCTAGTTGACTTGATTCCCTTCGTGCACTTGCTCCTTATTTATTCATCCTCTCGATTTAGCGGCTCCAGCTCAGTAGCAGAGCGTTTTATAGAGAGTCTGAACACTTGTTGTTACTGCAATTAACGTTACTGATAAACGCTAGAGAGAGCCAGCGAGGGAGACCTCAATGAATTGGCGTAAATGGAGCCAATAGGCTAAaacttacaataaaaataggCTCCAACTGATTGTACCGGATATTCCTTTAATTATAAAAAGGaggataaaatattttgtttttaaaaaagtaaagaaaacgaatgtgtatgttttcattttcgtacagaaaacatgttttagaCAAGTAGCATTAAGTAGCATTATTGCTACTTCGAGCTGACTGTTGAAATGCGTATAACTcaagtttaaaagctttaaaaagtaTGTCTTCGGGACTGAAACATTCcatattgtcatattttttcagtatggaAATGaccaaacattaataaactatgaTTTTACTCAGTTGCTCCATttaaacccattcattttgggcTCACTGTGGAGCGCTCCCTGGTGGTCAAACACAGCGGAAACGGTTTTTAAGTGGGTGTTCTCCTCTCTAGAGACTCTCAGTAAGTAGGTTGCTATGCAGCAGCCTAGCTAGGAGCTGGCGACTTAACGTTATTATCATCACTTGATGTAGCTAGGTGTACCATAGACATGTATTactgtagttagctagctagctaactaactagcctAGCCGTGAAGACtctgatttatttatgttacgttagcttagctagcaagctaataTAACCTAAATAGCGTTATCTGTTTTGGTTAGGATACGCGCCAGTTAGCTATTAGCTAGAAtaaatatttagttagtttaaagAGGGAAAACGGCTTCCTTTCCCCCCACCACCGCTATGAATGTCATTTCAGACCTCGCGTAGTTAAGTAAGTTAAgtcagttagctagttagctaaactagttagctagttaactatcCTTAGCTCCGccaccaaaacaacaaacaaagtGGAGCCAAGATATGAAAAGCGGACAAACTCGAGGGGAATAAAGTGTGCCGTGTGGACATGCCCTTTCCAGCAGCATGCAGGCTGatggcagcagcagcggcagcgtCGGCGGCAGTGCCCATGCCTCCCCGCCGGGCGCCGGGTCTTCAGCCGCCTCGCCGTGCCGGGTCCTCCCGGCGCTCACGCTCGGCATCGCGGCGGCGGCGGTGCTCCTGCAGTTTGGCTGTGGGGGACTCAGCCTAGCGGCGTTTTTCCTCAAGCTGTCCATTTCTGTCTCCTTCACGCTCTTCTGTTTCCTGCTGGGCTGCTTCGGTTTACTCGCCAAGAAGAGCCCTCTTAAACTCAGCAGATTCCCCACGGCCAAGAGGCAGCAGGCGCCCAACCTGCTGGATAAACTGATGggGCGTTTTTCTGTCCCGCTGCTGGATGCAGCACAGACCAGACGAGTGGTCGTGTCTCACAATATGGATAAAGCCCTTAAAGAAGTCTTTGACTACTGCTATAGAGACTATATCTTGTCGTGGTATGCCCCGCTGAGTCGAGATGAGGGGCAGCTGTATCAGATGCTGTCTGAAGATTTCTGGGAGATGATCAAGCAGCTGAGGGTTCGTCTCTCTGAGGTGGACGTCGTGAACGTTGTCTGCAACGACACCGTCAAGACCCTACATTCCCATTTCTGTGACCTCAAGGCTGCAAACGCCAGGCAGGAGGAGACTCCGAGGCCCTTGGCGCTGCACCCGTGTCTGCGCAGTTCCGAAGAGGAGCTGCAGTTTTTGCGTTGCTGCTCACGCCTGCTTGTGCTGTGTGCGCTGCCTGCACGTGACGCTCGCTGCCGCAGCCTCCGCCTCGTCCTGGTGGAGGTCATTGCCACTAAAGTGCTAAAGCCATTGGTGGAGGTGCTAAGTGATCCTGACTACATTAACCAGATGCTTTTGGCTCTGCTGGAGCATCGCGAACAGCATAAAAAGGCGTACATCTACGCAGACTCTTACGAAGATTTCTTCAAACTAATCAGCAACAGCACTGACATTGACTTCCTCAAACAGCTCAGGTATCAGATAGTTGTGGAGATTGTTCGAGCGACGACTCTCAGCAGCATCCCACAGTTCAAGAAACAGAAAGACAGTAAAGGGAAGGATGTAGCTGCTATGAAGGCAGACTTGCTGGGAACTAGGGATATCAAGCGCTACATCAATCAGCTCACAGTGGCTAAGAAGCAGTGTGAGAAGAAGATCCGGCTGCTGGAGGGTCCTAACTACGAGCAGGAGGTTGATGGCAACCAGGATGATGGATTTGGGCCTCAGGGCCAGAAGATTCTGCAGTTTGAGGAGATCATGTCTAATGCTCTTTACCGGGAACATTTCCGCATCTACATGGAGCGAGTTGATAAAAGAGCTCTCATCAGTTTCTGGGAGCTGGTGGAGACACTAAAGACTGctaacaagAATGAGGTACCGCAGCTGGTTGGGGAGATCTATCAGGACTTTGTGGAGAGTCGAGAGATCCCTGTGGAGAAAGCTCTGTTTAAAGAGATCCAGCAGACTCTGGTTGGGAACAAGGGCACGGACGTGTTCCACAAGATCCAGAGTGATGTCTATGAAACCATGAAGGAGCGCTATTACCCATCTTTCCTAGTCAGCGACCTCTATGAGCGGCTCATGAAGAGGGAGGAGCAGAGGAGCAGCTCGCAGTCCAGCAGCGAGGACAAAGATGATGGAtgtcaaGTCTTGGAGGGGGTAGAAGTGGCTGTAGACGAAGGCAGTAAAGGCATCAATGAACAGGCCAGCTACGCCGCCAACAAACTGAGCCAGCTGTGTGAAAGACTGGAGTACAAACGCCAAGCACTCGGCATCATACAGGGTGCACCCAGAACTGACAAAAAGATTGTGACCATGCTGAAGGAGGAGATCAGGGTGATGGAGAAGGAGCACAGTGACCTTCAGCTGCATATCTCACGCACAGACTGGTGGTGTGAGAACCTGGGCACCTGGAGGGCTGTCATCAACACTGCAGAGGCTTGCGAGGAGAACGGTGAGCAGATGCCGTGTTACTGTGTTGCTGTGAGTCTGTTAGAGGGAGACGATTCTAAGAACAGCTGCTGGAGCGTCACCAGGAAGCTGAGCGAGTTCCAGGCTCTGCACAGGAAGCTGACCGAGtgttttcccTCACTGAAGAAGGTACAGCTTCCCTCTCTCAGTAAACTGCCCTTCAAATCAATTGACCAAAAATTCCTTGAGAAATCCAAAAACCAACTCAATACGTTTTTGCAGAAAATGCTGACGGATGAGCTCATGTGCCAAAGTGAGGCATTGTACGCTTTTCTCAGCCCTTCACCAGAGCACCTTAAGGTCATGGACATCCAGAAGAAATCCTCCTTCTCCTTCGCCTCGTTTCTGGGGAGACTGCCTCGCGACTTCTTCTCCCATCAGGAGGATGAAGCAGATGACGACAGTGATCTCTCTGACTATGGTGATGATGCAGATGGAAAGAAAGATGACCTCGCTGAACCCTTCTTCATGCTCATTGGAGAGGTCTTTGAACTCAGGGGCAtgtttAAGTGGGTACGGAAGACACTAATTGCACTAGTTCAAGTCACGTTTGGACGGACCATAAATAAGCAGATCAGAGACACAGTAAACTGGATCTTCAGTGAGCAGATGATGGTttactatattaatatattccGGGACACCTTCTGGCCCAATGGAAAGCTGGCACCCCACAACAAATCTCGCTCGGACAGCGAGCGTCAGGAGACCAAGGAGAGAGCCCAGCAGAAGTTGCTGGACAACATTCCAGTTGAACTGCAGAACCTCGTGGGGCAGCAGAATGCCAGGTATGGGATTATCAAGATCTTTAACGCACTTCAGGAAGCCAGTGCCAACAAGCATCTCCTTTATaTTCTTCTGGAAATGCTCCTCAAAGAGCTCTGCCCTGAGCTGAGTGGAGAAACGAAGCAGGTCTGATCACAGATACCCGGGACTGAAGGATGAGCCTCCTCGGCTTTGGTTATTTATCTTTTACTTTGGTGTTTTTTTGGaagcaatttattttatttctcgaTCTTTATCTGAAAATACTTGACTCAGTAGCACTCGTGTGAGGGGGGCTTCACGGACATCActattgcatatttttttgtcacCTCCGTCCGTTATATCTCTCGCTGGATTGTATCTACACACCAGGTCTACTGCCAACCtaccacattttatttgttttcgtttcttttttgttgtctGTGGGGTTTTTGTTAGACCTGGTAAGGTCAACAAATGTGAATAGTTGTGGAATGAgtgttgtaatttaaaaaaaagtaaagaaaagagaaaaaaatggaaaccTGGACCTCTTAAACCTCCCtacctacagtacagtacatattGTGGACATATtttgaaggattttaattgtTCAATCTGTCATGTAAAGTTATTGTGACAATTTCtttgtgatattattatagattttatttttaccaaaaataGACTTAGATCATTTATAAGCAATAAATTGCGAAAAGAA

Function

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17887 SNX25, MDM1; sorting nexin-25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU276877 lncRNA downstream 59595 8515842 ~ 8516375 (-) True G204078
TU276860 lncRNA downstream 148420 8425387 ~ 8427550 (-) True G204066
TU276863 lncRNA downstream 148420 8426841 ~ 8427550 (-) False G204066
TU276823 lncRNA downstream 365151 8210100 ~ 8210819 (-) True G204032
TU276820 lncRNA downstream 418199 8156629 ~ 8157771 (-) True G204029
TU277002 lncRNA upstream 146599 8795301 ~ 8825391 (-) True G204178
TU277045 lncRNA upstream 370204 9018906 ~ 9049811 (-) True G204217
TU277047 lncRNA upstream 411516 9060218 ~ 9067121 (-) True G204219
TU277050 lncRNA upstream 416907 9065609 ~ 9066693 (-) True G204221
TU277052 lncRNA upstream 456166 9104868 ~ 9105080 (-) True G204222
XM_007247477.3 mRNA downstream 9938 8556398 ~ 8566032 (-) True fnta
XM_007247479.3 mRNA downstream 329020 8230091 ~ 8246950 (-) True LOC103028028
XM_022683535.1 mRNA downstream 832793 7456739 ~ 7743177 (-) True LOC107197584
XM_015605382.2 mRNA downstream 832793 7599145 ~ 7743177 (-) False LOC107197584
XM_022683536.1 mRNA downstream 832793 7599150 ~ 7743177 (-) False LOC107197584
XM_007247474.3 mRNA upstream 3708 8652410 ~ 8667241 (-) True enpp6
XM_007247473.3 mRNA upstream 28420 8677122 ~ 8702281 (-) True irf2
XM_007247472.3 mRNA upstream 28420 8677122 ~ 8701781 (-) False irf2
XM_022683540.1 mRNA upstream 55256 8703958 ~ 8714319 (-) False LOC103025383
XM_007247471.2 mRNA upstream 55256 8703958 ~ 8714319 (-) True LOC103025383
TU276738 other downstream 927084 7624083 ~ 7648886 (-) False LOC107197584
TU276577 other downstream 1971492 6603676 ~ 6604478 (-) False jph3
trnai-uau_43 other downstream 2043441 6532437 ~ 6532529 (-) True trnai-uau_43
trnai-uau_42 other downstream 2044302 6531576 ~ 6531668 (-) True trnai-uau_42
trnai-uau_41 other downstream 2045291 6530587 ~ 6530679 (-) True trnai-uau_41
TU277526 other upstream 1995552 10644254 ~ 10644687 (-) True G204584
TU277652 other upstream 2934498 11583200 ~ 11584074 (-) True G204671
TU278618 other upstream 5085011 13733713 ~ 13739921 (-) True LOC111195729
TU278646 other upstream 5124615 13773317 ~ 13777621 (-) True G205375
TU278710 other upstream 5325975 13974677 ~ 13978450 (-) True LOC103035169

Expression Profile