RNA id: TU37652


Basic Information

Item Value
RNA id TU37652
length 3215
lncRNA type sense_over
GC content 0.42
exon number 3
gene id akap7
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53742880 ~ 53907412 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaGCAGTCACAGCAGGCTGTGTGAGGCATTCTGCCTCcctcatgcatgcacacacacacgctccatCTTACTCCTCCACTGGAGCTGGATCGTAGCTGTTGGATTGTACAGGTCGTCCGTGAGCAGCGTTATAAATCTATGTATTTATAAATCTAtacatacagaaagagagagagaaagagagaaaaatatggGTCAGTTGTGCTGCTTCCCTTTTTCACGAACGGAGGAGAAACTCAATCTTTTGCAGACTACACAGCGCACTGCACGAACAAgTGGTAAGCGAGGCCCTGAGCTGGACGATGAGGAGCTGGTGAGTCTGAGTAAGAGGCTGGTGGAGGACGCCGTGTTTCGGGCGGTGCAGCAGTACATGGAGGAGACGCAGCAGAACGGTGCGGCGCCCAAAGACGAGGCCCCGTCCCCTCTGACCACCAACAAATGACCCCGTGGCCTCTGAGCCGGAGCCCTCACCCACCCAACCCCGGGCGGAGCGCTGGAGCCACGCATGCCTCCTCCCAGCCTCCGggcgagagcgagcgagagcgCCGTGGAGCGATAAGAGCTCAGGGAACTGGAGAGCGgcgggaaggagggagggagcgcGTCTGAGACGAGGCAGCTGAATTttggatctggatctggattGGACAGTGGATTATTCGCTATGCAGCTTTCTTCCTGTGTGTTCGTACATGCGTCAAACCTGCAGCCGTCACCAGTGTCCTGCCCGAGAGAGGGcctttctgttctttattttttgctttaagAGAGAGTTTAAGAGTTTGGCTTGGAATCAGCTTGGGTTTACAGTTTCCCATCTTTTGGCTAAAGATCAGTTTTGTGCTGATtgtgtgttcagtttgttggattttttgtttctttgttttaacaCTGAAGCTAAGAAGCTAATGTAGATGTAAAGCTAACAGGAAATAGAAGCTTTTATTCCAAATAACAATTAGCAAAAATAATCATACACTGATCTCGCAGTGTgtggaattattcagtaatcaAACTCTAATCAAACTTGCTTATGTGGTTTCTGGCACTGTATGAATCACTGTTATCTGTAAACATGGGTTAAAGCGTGCTAGGCTAGCATAGCTAGTCTGTTGCCTTTTGTCTACAGTACTCTGTCTACAGTACTTCTGTCTGCTTTCATTCTTTATTGAGGTGTGAGTTAGCAGTTAGCAtaatgctaattggtggggtataagcttctattaaatatgttagctacagttagctactactactacttttgaGGCAAAGGGGGAACTGTAATCATGGTATTTGAATTtgaactttaatttaaaagattGGCTAAAGCCTGAATTATGAAAGGGgggtgatggggggggggggggggggagaataGATGAGGAGACAAAGTTTGGGGAGAAAATTAGTGCACAAGAACAGTGCACACAGGTCACCTGGAGTTATGAGATGGACAGATgatctcacacatacacacccacacacacacccacacacacacacacacacacactacagtgcTAGGCTCGACTCAGTTCGACAATCAACGCTGCGCAACACCTCTAAACCCACAGAGAACATGAACTAAAAATGAACTGCATCTCTGAACCTCTTGACTCTTTAATACCTGAAGAGCAGCACAGATCTGTGCGCTTATAACGGCTCCAAAGACAAGCTTAGGAATCCAGAAGCGCTATGAAGGATGTTTGTCACTTTATGCTATTGTGTTTCTCAGCAAGTGAAAACATGCAGGCAGTATATCTTATCAGCTCTTCCTATTGATTATGATAGAATTATTATTTAGCTATATATAGATTTAGAATAGGATACTGGGAAAAGATCTCAGTACATCCTCTAGACAaaagccttatatattttatacctccaaaatagcaacttgggatctttttaactttcaatagaagtaaatgtaaaaagatttaatacCAAATAATTTCTGAGCATTTCTTTCGATCCATTGGTtattacattttgacacaatgtaaagaacaaatgCACAGGAGTAATATACATATCACCACTGCCTGAACTAAACCTCTATTGTATCCTcacattattttgttatttttttccacatcaTTCTAAATCTCCTAAAACTGTAGTTTAACATGTTTCACATGATTGGTAAGAAGCTGTATAATGTctagaataaataataacaattagCTTAATTAGCATAATGTGCTAATTAAGCAAAACTAActataactgtaaaaatatattcatttaattgatttaatatttttaactgaTAAATAGGTACTGTGTACATATATCATTTAAttactacttttatttaaataattattcacatataaaaacactttttgacTAAAACTGAGTCATAGTTTATATTAAATCAGAATTTATTAATGAATGGATcatgagaaatgttctaaaatgacataagattttatttcattcatttttattgaaatttaaGAAGGATTTTTCTTCTCTTGaaatgttgctgttttggagatactacACACTACAACTGGCCACTGCAACAAATAGAATAAACTGAGATTATCTGCtattactctgtgtgtaaccTCAGAGATGAGATATGTTAGATACACAGCCCaaatgtgagctgttttcacTTGCTGAGATAAGAGgatgttgtgtagtgtgtaattgtgtgtgtgtgtgtgtgagtgtgtgatttgTTATGGCTGATGCTAATTTCAGTGTTAAGGATCATGATGTGCTGAATAGCTGTATTGTTCATttctatattttgtttgtttatttgtttgtttgtttgtttgtctgtttttgtttgtttgttgtgttcTGCAGGCCGTGTGTGTGACACACATCTGTTGGAGAGGATGCTGgaggcagagagagtgtgtgttcagagGCGGGTGAAGGACTTTAAGACACTATTAGAGCAACCAGCAGTACGGGCACTCATCACACGAGAGCTcagcctgaacacacacacacctgaccaGCAGCAAAccaaactctaacacacacacacacacacacacacagcaaaacacTGACTAACACTCATTTACACAGTCAGAGACCAACaaactgttcacacacacatttcagcaaACTGATCACTCTggttcagtatctctctctctctctctatctatctctcttgctctcacacacacacacacatatatatatatatatatatatatatatatatatatatatatatacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37657 lncRNA downstream 558 53793218 ~ 53838213 (-) True G28074
TU37653 lncRNA downstream 1112 53826210 ~ 53837659 (-) False akap7
TU37666 lncRNA downstream 5527 53830473 ~ 53833244 (-) True G28082
TU37506 lncRNA downstream 175619 53662814 ~ 53663152 (-) True G27960
TU37504 lncRNA downstream 176856 53661543 ~ 53661915 (-) True G27958
TU37678 lncRNA upstream 8506 53878118 ~ 53881179 (-) True G28093
TU37683 lncRNA upstream 21486 53891098 ~ 54247479 (-) True G28098
TU37696 lncRNA upstream 110857 53980469 ~ 54049399 (-) True G28110
TU37693 lncRNA upstream 180183 54049795 ~ 54055681 (-) True LOC103040805
TU37721 lncRNA upstream 364525 54234137 ~ 54234756 (-) True G28133
XM_022678355.1 mRNA downstream 122863 53689367 ~ 53715908 (-) True med23
XM_007252949.2 mRNA downstream 428702 53333965 ~ 53410069 (-) False LOC103035653
XM_007252948.3 mRNA downstream 494027 53333965 ~ 53344744 (-) True LOC103035653
XM_022662540.1 mRNA downstream 1072927 52760053 ~ 52765844 (-) True glrx5
XM_022662649.1 mRNA upstream 15484 53885096 ~ 53907412 (-) False akap7
XM_007259686.3 mRNA upstream 293490 54163102 ~ 54190321 (-) True tmem200a
XM_007254895.3 mRNA upstream 598405 54468017 ~ 54524305 (-) False tab2
XM_007254897.3 mRNA upstream 598405 54468017 ~ 54524304 (-) False tab2
XM_007254893.3 mRNA upstream 598405 54468017 ~ 54524304 (-) True tab2
trnal-cag other downstream 216413 53622276 ~ 53622358 (-) False trnal-cag
TU37335 other downstream 988865 52786472 ~ 52849906 (-) False G27821
TU37336 other downstream 1010818 52786472 ~ 52827953 (-) True G27821
XR_001518286.2 other downstream 3098337 50725063 ~ 50740434 (-) True pcmt1
XR_002648509.1 other downstream 3299099 50537655 ~ 50539672 (-) False LOC103034285
XR_002648645.1 other upstream 181149 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 687334 54556946 ~ 54623799 (-) False LOC111188920
trnal-cag_7 other upstream 974450 54844062 ~ 54844144 (-) True trnal-cag_7
TU38133 other upstream 1630288 55499900 ~ 55501760 (-) True LOC111189318
TU38134 other upstream 1630288 55499900 ~ 55501760 (-) False LOC111189318

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU367699 False 1964 lncRNA 0.48 3 NC_048568.1 15875328 ~ 15881137 (+)
striped catfish (Pangasianodon hypophthalmus) TU482718 False 2064 TUCP 0.46 3 NC_047624.1 2330681 ~ 2344309 (+)