RNA id: XM_007252948.3


Basic Information

Item Value
RNA id XM_007252948.3
length 3601
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC103035653
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53333965 ~ 53410069 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atggctGTGAGAGGAGTATCAGGACGGATCGAGGAGAGGAGTACAGGAGTAGATCTGCTCCCTCTGTCCTAATGCAGCAGTGAGAAGGGGCGTGGGGGCAGGAGCGGAGGGCAGAGGGACAGCAGGGGGGTGGAATGTGGTGCTGGAATAAGAAGAAGAGTTTGTGAcggactgctgctgctgttggaaTAACTCTGTGGTGTTGGGAGATGGATAAGAGCGCGCGTGCATGAAGAACAGAGCGCacaggaggagaaggaggagggcAGCATGGACACGCGCAGGGGGGCAGAGGTCTCAGACTCCAGATGTCCGGTCCCCTGGAGTTTTCCTGGGTTCAGCCCCAGTGGAGTGTGACGGCCGGGCTGGAGGAGGCATGGGCCGGGCGCTGGGCACCATGAGTCCTGGCCATGCTCTGATATTTTAGCATGGATGGCGCCAGCAGCAGAACCTGCGCCCACTAACGAAACTACTGGACTGCTGAGGTGCAGGACTAGCAATTACAGAAGGATTAGCTCTCTGACTTCCTGTGAACTTTGCATTAGTGAAAGCTTTTAAAGGACTTCCTCTTTCTTCCGTTGGATTTACTTCATCTCCACTCTCCTCCCTCAATCCACAGAtcttgtgtttattattattactacagttttttttttttatctccttcTCATCCCCACCTGTCCCACAATGGAGTTCCAGGTGGGACTGTGGAATAATGATTGGACCTCTTTTGTTCGGTTTTGGTTTACTGTGCTTCTGAGCCTGCAAGTGCAGTTTGGCCCTGTGGCCTCCTGTCCCAAAGAGTGCCGCTGCGACAAAACATTTGTTTACTGTAATGAGAGGAGTCTGACATCTGTGCCTCTGGGGGTGCAGGAGGGATACAAAACCCTCTATCTCCACAACAACCAGATCAACAACGCCGGCTTTCCACTGGAGCTGCACAACGTGGCTTCTGTGGACACGGTCGTCTTGTACGGGAACCAGCTGGATGAGTTCCCCCTCAACTTGCCGAAGAATGTAAGAGTACTGCACCTGCAGGAGAACAACATCCAGACCATTTCCAGGGCAGCCCTGGCCCAGCTACCAATGCTGGAAGAACTGCATCTGGACGATAACTCCATCTCCACTGTTGGGGTAGAGGAAGGGGCTTTTCGAGAAGCCGTAAGCCTCAAACTCCTCTTCCTCACCAAGAATCACCTGAGCAGCATCCCCATCGGATTACCAGTGGACCTGAAGGAACTGCGCTTGGACGAGAATCGGATTGCTGAAATAGACGAAGACGCTTTTCAGAACGTCACCAACCTGCAGAGACTCCTTTTGGACGGCAACCTTTTGGAAGATGAGGCCATTGCTCCTGGAACTTTCCAGAACCTAGACAAGCTGAGAGAGCTGTCTTTGTCCAGGAACTCTTTGACGGCCCCACCACCACTTCTTCCTGGGGGTTCCCTGGTCAAGCTCAATCTGCAAGAGAACCAGATGCAAGACATCCCAGTGACAGCTTTCTTTGGGCTTGGAAAGCTGGAGAAACTTGATATTTCATACAACTTGCTTCAGACTTTGCCACTGGGAGTCTTTGATGGCCTGAATAGTTTAACACATCTCTTTGTGCGGAACAACCAGTGGCTCTGCGATTGCTCCATCAAGTGGGTCATCGCCTGGCTCAAGTCCCTCAAGTCCTCTTTAAATGTCCGTGGGTTCACGTGTTACAAGCCGGAAAGAGTACGGGGGATGGTGATTCGAGAGCTCACTCTAGAAGCCCTCCAGTGCCCGGCTGGCACAGAACTCCATCCATGGGTCACTCAGGTACCTACATCTCCTTCGACAACACCTCACAGAACCACAAGTACTCCCAGAAACACCCGTACAACCATTACCCCATTCACAACTTTGCACCCAACATCATCCAGTTCACCCACACCACCCTTAGTCCATATCCCAGTCGGTCGCTTTCCTCCCTTGGGTGACCCCTTGAAACTATTCTTGAATGTAGTGAACTCCACCTGCATAGAGGCGAGCTGGGAGTCCTATTTCACTGTCACGGCTTACAAAATCACCTGGGTTAAGAGAAGCAAAGGTCTGATGACAGACAAGAGCCAAGAAAGGACGGTCTCAGGAGATCAGAGGAGGCTTACTTTGTCAACCCTGGAGCCACGATCTACGTACCGCGTCTGCGTTTATGTTCTGGATACTCTTAACAGTTACAGACCAGGAGAGGACACAATGTGTTTggaaatcaagaccaagacagcTCCGATCAACTCCAATACGGTTACGGAGTCTGAGCAGGCAGCCCGGCAGGACAACAATTCCACGCTCCTTTTGGCAGGAGTGATAGGCGGAGTCGTGTTTGTGGTCTTAGTGACTCTTCTCAGCCTGTTTTGCTGGCACATGCACAAGAAGAGCAGGTCGTCCTCGTCCAAATGGAAATATAACAGGGGCAGGAGAAAAGACGACTACTGCGAGGCTGGCACCAAAAAGGATAACTCTATCCTGGAAATGACTGAAACCAGCTTTCAGATAGTTTCACTGAACAATGAGCAGCTCTTAAAGGGCGATTTTAGAATCCAGCCCATCTACACCCCCAATGGAGGCATGGGCTACAGAGACTGCCATCTCAGTAACAATAGCATCGCTTACTGCAAAAGCAGCAATGTTCCAGCTGTGGACTTCTGCCACACGTGATACGCGCTACAACCTTTTTGGAAGAAAATGTAgttccgtaaaaaaaaaaaaaaacatatactgtacaatatgcatatacatattatataaatatatatatatatatatatttccaggTTGAGTCGACATGGTAATTTATACTGTGGACAATTATGTGGAATTcagctgttctttttttatctgattcttagtaaatataatacaaatggGTTTGTAATTAATGGGGCTTTACTGTGGTTTTACTCGAGGGTGGCGCAGTTGTATTTGTACAATCATGGCACGTCGGATCTGGTCTATCTGGTGTATGGGTCCACCCCAGGGTTCGGTTCTCTGCCTCATGGGTGTTAAACACAGGCCTGGAAACTTTGCTAACCACAGAATCTCAATATGCCCTTTACTCTGAAATACAGCGACTCTTTTCATACAACCAACGGTAGTTAagacaacacagcgggcaggaAAACTAAACACTGCTGATTAGCCTGCGGGCTTGGGCTGGGCTGGGCTGGGGTTGGGTGGGGTGTTGAGGTGGTGAGGGGGTCTAGAGGGGGTTAACTAACATAGGAGCTGTtttgttatgatttttttttttttttttaagtttttcttcttctctgcaaAAGAAATGAAGTGCACTTTCCTAATATGTGAGCGAGAGTGCAAGTAGCCATTCAGGAAATGAGCTTTTGGCTTTTGTGGAAGTGAAAGAGAAAAGGTTACACGTTTTCCAATGCCCCCCCAAAAAACTCACACAGGGCAAGCGAACAACACTGAATGAGCTAGAATGCCAGAAGTGCTTTACCGGCCAGCTTTCACcagggttttcttttttttatatatatataaattatttttggtttattgttgttACCACCAGAGGGCAGATGTTTTTTGCATCTTTCAGGTTTCAGCAAAAAAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37424 lncRNA downstream 7277 53307642 ~ 53326688 (-) True G27883
XR_002649729.1 lncRNA downstream 109816 53222854 ~ 53224149 (-) True LOC111191924
TU37392 lncRNA downstream 149316 53183929 ~ 53184649 (-) True G27869
TU37384 lncRNA downstream 241338 53091024 ~ 53092627 (-) True G27862
TU37379 lncRNA downstream 253725 53079808 ~ 53080240 (-) True G27857
TU37452 lncRNA upstream 113061 53457805 ~ 53529684 (-) True G27906
TU37457 lncRNA upstream 155140 53499884 ~ 53504832 (-) True G27911
TU37464 lncRNA upstream 189896 53534640 ~ 53534997 (-) True G27918
TU37465 lncRNA upstream 197117 53541861 ~ 53542276 (-) True G27919
TU37466 lncRNA upstream 216527 53561271 ~ 53561525 (-) True G27920
XM_022662540.1 mRNA downstream 568121 52760053 ~ 52765844 (-) True glrx5
XM_007252947.3 mRNA downstream 568701 52760053 ~ 52765264 (-) False glrx5
XM_015606803.2 mRNA downstream 616898 52670111 ~ 52717067 (-) True LOC107197707
XM_022668102.1 mRNA downstream 692381 52640295 ~ 52641584 (-) True LOC103041285
XM_015606810.2 mRNA downstream 779693 52525768 ~ 52554272 (-) True LOC103032373
XM_022678355.1 mRNA upstream 344623 53689367 ~ 53715908 (-) True med23
XM_022662641.1 mRNA upstream 494216 53838960 ~ 53907401 (-) False akap7
XM_007259689.3 mRNA upstream 494336 53839080 ~ 53907403 (-) False akap7
XM_007259688.3 mRNA upstream 494336 53839080 ~ 53907403 (-) True akap7
XM_022662649.1 mRNA upstream 540352 53885096 ~ 53907412 (-) False akap7
TU37335 other downstream 484059 52786472 ~ 52849906 (-) False G27821
TU37336 other downstream 506012 52786472 ~ 52827953 (-) True G27821
XR_001518286.2 other downstream 2593531 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 2794293 50522899 ~ 50539672 (-) False LOC103034285
trnal-cag other upstream 277532 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 706017 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 1212202 54556946 ~ 54623799 (-) False LOC111188920
trnal-cag_7 other upstream 1499318 54844062 ~ 54844144 (-) True trnal-cag_7
TU38133 other upstream 2155156 55499900 ~ 55501760 (-) True LOC111189318

Expression Profile