RNA id: XM_022662649.1


Basic Information

Item Value
RNA id XM_022662649.1
length 2488
RNA type mRNA
GC content 0.47
exon number 8
gene id akap7
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53742880 ~ 53907412 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGATCCTCCAAGCGCTCCGTAGTTGTTGACAAGTAGCAGCGCGGCGCCACGCGGTGAGAAAAACAAACCGGAGAAACGCTGCGCTGAACAGAAGCTGTAGAACCGCTAACATTAACTCTAATACACAGAATATCAGAGACCAGCGGCCAGGAGAGACCGAGCAACCGCCGAGGATTCACTCTCTCAGGAGCTGCTGAATCTGAGCTGTTTCAGCTGCAGGAGTTACTAATAGAGTGAGTTAGAAAAGAGGTCAGCGTGAAAACTGAGCCGagcaacacacacagactcgtACAGTCTCATACAGCTAACTCTAGGGTTACCAGCCCTTCTGCTGCAGAGAGTTTATACAGCTACTGACCACAGAACATACAGACAACAGCTGTTACTGACCCTTAAGCCCAGACAGTTAAACTACTGTCCGTCTAACATTGGTCTTAAGCTACTTTAACAGCTACTGACCCCAGAAAATACAGACAACTGCTATTACTGACCCTTCAGCCCAGACAGTTAAACTACTGTCTATCcaactgagataaaaaaaaacaactactcACCCCAAAAAATACAGACAGCTGCTATTACTGACCCTTCAACCCAGGGAGTTTAACTACTGTCCGTCcaactgagataaaaaaaaacacaactactCACCCCAGAAAATACAGACAACAGTTGTTACAGACCCCTCAGCCCAGACAGCAAAACTACTGTCTGCCCATCTGTGGTCTTAAGCTACTTCAACAGCTACTGACCCAGAAAATACAGACAAAGGCCAACAACGGCTGTTACTAACCCTTCAGCCCgtacatttaaactagctagctactgtCCCTTTAGCTGAGTTCAACAGCTACTGACCATTCAGCTGAAACATTTAGGTTAGCTAAGCTCCAGCCAGGATCTAGCAGCTGCTACTTAACTTTCAGCTGTACAGTTTAAACTGCTGATTATTCTCCTGTGAATATACTGTAGTACTTGTTGCCCTTTATCCATACCTAGCTAAGATACTGAATGTAAAGTCTGTCTACTCCAAAAGCTACTGACCCTTCAGTTTAGACTGTCCAGTCAAAGATATCCAGCTCCTGCCCCTACAGCATTCACACGCTGTCCACAGCTAGCTAAGTGTGTCTTACTGCCATAGACTTTATACTTACCTGTTATTGAATAACCTACAACAAATAGGCTTGAAAAACTCCACTAGATCAAACAGGCATAAccaccacccactgtgctgtgtctgtctgtcacaGCCCAGTCTGACATGTTCAGGAGGTCTGTGTTATTTATTACATCACTGAACAAGAACCTGTCGAGAGCATTTCATGCCTGTACCCAGTCAGAAGTGGTCAGATTAAAGCTTCAGACTCTCAAAGTGACCTATCAGCTTTCACCACTTCGTCACCTGTCCTGCATACCTCAGAGAAAGGTGGACTATCTGATCTCCATGCAGTCCGTTCCAGAAAAGACAGCGGCCGGTGGTCAGTGTGGACCGCATTCGGAACCATCTGGCACAGCAGTCAGAAAAGAACCTGCTACTGaaagtaaaaaagtgaAGAAGGTAAAAAAGGTGAAGAATTTTAAAAAAGCCCGTGGGAGAAAGCAGAAGGAGAAAGAGTCCACGCTGACACAGAACCTGCTGGCTGAACTGcctttctccagcacagagataTGGAAGGAGCTCGGCTtcACTGGCAGCGAGTCAAgctcagagaaaaagagaaagagagcagggAAGGGACGAGTGGAGGACGAGGAGGAcggagaggagaagaagaaaaagaaaaactgtccTCGGCCGAACTACTTTGTGTCAATACCAATCACCAACCCAGAGATAAAGGAGGTAGTAGAGGAGTTGCAGGCAGAAGTGCTACAGAAGGAGCCTCGTCTCTCTAGAGCTTTAATTCCTGTGGGCACTCTCCACATCACACTGCTCGTCACACACCTGGCCACACAGGAAGAGATAGACGCTGCTGCTTTAGCACTAGAGGAGATGCAGCCCACACTGATGTCCCTGCTGGGTGGGCGGAGCCTTATGCTGCCCTTCCGTGGAATTGGTCACTTCAGACAGGAAGTTGCTTTCATTCAGATTGAAGAGGGACAGCATCTCAGCACCCTGATCGATATCGCAGacTCAGTCAGGAAGGCTTTTGAAGAGAAAGGCGTCTCGTCTGGAGATCAAAAAGACTTCAAACCTCATCTGACCTTCATCAAGCTTTCACGAGCACCCAAACTGCGTCGGCAGGGAATTAAGAAGCTGGACCCTGCTCTGTATGCTGCGTTTGAGCAGCGAGTGTTTGGTGAGGAGAGTGCGTGTACCCTGGACTTGTGCTCAATGTTGAAGAAGAAGTCTGCAGATGGATATTACCATCGCGAGAAAACCGTCAGGTTCATCCCCAGCAGGTGGTGCAGCAGCCCTTGAGGCAAGTCAAATGCTGTGAATTACACACACTTCACTAAACTGCCTACAGCACAGACACAcaatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37678 lncRNA downstream 3917 53878118 ~ 53881179 (-) True G28093
TU37654 lncRNA downstream 15484 53742880 ~ 53869612 (-) False akap7
TU37652 lncRNA downstream 15484 53838771 ~ 53869612 (-) False akap7
TU37657 lncRNA downstream 46883 53793218 ~ 53838213 (-) True G28074
TU37653 lncRNA downstream 47437 53826210 ~ 53837659 (-) False akap7
TU37696 lncRNA upstream 73057 53980469 ~ 54049399 (-) True G28110
TU37693 lncRNA upstream 142383 54049795 ~ 54055681 (-) True LOC103040805
TU37721 lncRNA upstream 326725 54234137 ~ 54234756 (-) True G28133
TU37722 lncRNA upstream 326819 54234231 ~ 54238171 (-) True G28134
XR_002648647.1 lncRNA upstream 351499 54258911 ~ 54265628 (-) True LOC103031114
XM_022678355.1 mRNA downstream 169188 53689367 ~ 53715908 (-) True med23
XM_007252949.2 mRNA downstream 475027 53333965 ~ 53410069 (-) False LOC103035653
XM_007252948.3 mRNA downstream 540352 53333965 ~ 53344744 (-) True LOC103035653
XM_022662540.1 mRNA downstream 1119252 52760053 ~ 52765844 (-) True glrx5
XM_007259686.3 mRNA upstream 255690 54163102 ~ 54190321 (-) True tmem200a
XM_007254895.3 mRNA upstream 560605 54468017 ~ 54524305 (-) False tab2
XM_007254897.3 mRNA upstream 560605 54468017 ~ 54524304 (-) False tab2
XM_007254893.3 mRNA upstream 560605 54468017 ~ 54524304 (-) True tab2
XM_007254896.3 mRNA upstream 560605 54468017 ~ 54524303 (-) False tab2
trnal-cag other downstream 262738 53622276 ~ 53622358 (-) False trnal-cag
TU37335 other downstream 1035190 52786472 ~ 52849906 (-) False G27821
TU37336 other downstream 1057143 52786472 ~ 52827953 (-) True G27821
XR_001518286.2 other downstream 3144662 50725063 ~ 50740434 (-) True pcmt1
XR_002648509.1 other downstream 3345424 50537655 ~ 50539672 (-) False LOC103034285
XR_002648645.1 other upstream 143349 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 649534 54556946 ~ 54623799 (-) False LOC111188920
trnal-cag_7 other upstream 936650 54844062 ~ 54844144 (-) True trnal-cag_7
TU38133 other upstream 1592488 55499900 ~ 55501760 (-) True LOC111189318
TU38134 other upstream 1592488 55499900 ~ 55501760 (-) False LOC111189318

Expression Profile