RNA id: XM_015606803.2


Basic Information

Item Value
RNA id XM_015606803.2
length 2179
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC107197707
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52670111 ~ 52717067 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctgagAGTGTCTGGGTGGTGATGGCAGTGTGCTGGTCGCTATGAGCTGAGCTGTGGATGGTCTGCTCTCTGGTTTCTGAGGTGATCTTCTCTATCTTCTCTCGGCGTCTCTCCTGCACCTCGTGCGCGCGCTCACAGCCCAGCGCCATGGATCTGTCATTCATGGCCGCGCAGatcCCGGTCATGACGGGGGCCTTCATGGACTCGTCCCCCAATGACGACTACAGCACCGACCACTCACTCTTCAACTCCTCTGCCAGTGTCCACACAGCTGCGATGGCAGCCCACCACCAGCAGGAGGAGCAGCAGTCCATGTCCCGCGATGCCATCTGGCTGTGGATCGCAATCACCGCCACCATCGGCAACATCGTGGTGGTGGGCGTGGTCTACGCCTTCACTTTCTGAACTGGACAAACTCAAACTGGACAGAAACCTGAGAGACCAGATCCAAACTGAAGGCCAAAACTGAGCCGAAATTCTAGAACAGGGTGGTGAGGTCTTTCGCGTAGCATACGTAGATGTAAcgtttattttctttctcccttACGATTTTTACACAAATCAATGTGAAGGTTTTTAGAGTATTTTTGATGCATCGCTCCTTCTGTTTGCTTCCTGTAAGCTGATGAATTACGAACAGCATGGTGTAGCAGAAACGAAAGAATAATAAGCCACGTTTGGTACTTATGaacattttgtatatatttttgcctCTAGTTTCAATGTATGgagtttttaaagctttaaatgtaTAGAGATCATCTATTTGAGATGTCAATCGACTGCAAAAATCCCTGATATTTCAAATGGATATGAGACCAATAATTATGGTTTAATAATGCCAGTTTCCTCACTTTCCactaaaaaattacttttaagtGTACAGTCTGCCAGTTTTTCTACTTGATAGaccttaaaacatatttatttctaattctaTCCTATTTCTTCTCAATTTGGAAGGTCAATTAATCAATCCCTGTTTATATGAACTCCCCTTATCATTAGGCAATGCTTCAAatactaggagggtgaagacttgcACTCTTTTTAAACATCACTGGGTAGCCAGCGCACTTAGAGGAAAGCATGGTTCCCCAGCTCCGATagatcagctaacagatgcccgTGCTGACCACCATCAaactactcacccagagagagcaaggtctgttgtgctctctcggattctggctgctgatgacaagcagcatgatctggtATTCACACCAGCAATCCAGGGATCACAGTGACAGCGCCTTAATCCGCTGTACCACTCTGAGCCCTAGTTGAGCATTCTTAATCATTCATCAATTGGGCCATCTCTGTTATTTGCACATTAACTTGTCCACCCTCTATGCTATCCCCTTGGTGGTTCTGCCTCTTTAACACACGCTACAATCATGCCCCTCGCACCACAGAGACAATCGATCGGCTGAACTCTCAGCACGCACAGAACATCGCGTTTTCCCCTCACGTCCACCATTCCTCAcgtttgtttaatttcagtaCTTTGCGCTTGTTTTTTGATTCATTGCCCCGCGTCCCGATCGGCAGGGTGCCGCTTTGTTCCTGTCAGCGTCGGTGCCGTCTGCCAGCGAGACAATAAGCCTCGCTTTTAATGAGTTCTGGGGAGAGGCGCGGGTTGCCATGGCAACTCGGGGTGCCTTGCCTTGGACAAAGTGGAGGAGAGCTCCCGTTCTGGTGACACATAAGTACACAcctgctccacacacacaaacacacgcacacatatgaCCTTTCCAAAGACCTCCAAGAACTTGCACTAGGAAAAGCATCTGCAGAAACCAGACAAAGGATTGGACCCACTCCTGTCCTGACTAAACATGTGTTTTTAAAGGCTTATGCTTAAAGCATCTTTCCGTTCCATCAAACATATGTACAGTACCCTAATTCATAATGACTGGAAAGGAAAATTGACTTGTTTTGGGATCCTTTGGATAGTCGCCAAGGTAGTACTGGGAGTTTATAAGATGCTAGACTGAAGCGAGGAGGAGCTTTTAGGACTGGTCTACCTGACaaactttgtttgttttaaatgtcctaTAAAGCATTTAAGCATAAGCCTTTAGGTCAACAtgcatttaaccctttcagacactgcatccattacaatggacagcaTAACACTATTcaagagctgttgtccatcagaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37233 lncRNA downstream 190573 52479262 ~ 52479538 (-) True G27755
TU37214 lncRNA downstream 268915 52365841 ~ 52401196 (-) True G27738
TU37142 lncRNA downstream 361344 52308348 ~ 52308767 (-) True G27690
TU37141 lncRNA downstream 366134 52303601 ~ 52303977 (-) True G27689
TU37139 lncRNA downstream 374161 52293918 ~ 52295950 (-) False LOC103040973
TU37284 lncRNA upstream 3594 52720661 ~ 52779893 (-) False G27798
TU37283 lncRNA upstream 61464 52778531 ~ 52779893 (-) True G27798
TU37298 lncRNA upstream 64958 52782025 ~ 52782480 (-) True G27808
TU37325 lncRNA upstream 69405 52786472 ~ 52812630 (-) False G27821
TU37337 lncRNA upstream 80498 52797565 ~ 52816766 (-) True G27822
XM_022668102.1 mRNA downstream 28527 52640295 ~ 52641584 (-) True LOC103041285
XM_015606810.2 mRNA downstream 115839 52525768 ~ 52554272 (-) True LOC103032373
XM_007252939.3 mRNA downstream 115864 52525768 ~ 52554247 (-) False LOC103032373
XM_022662303.1 mRNA downstream 179224 52484734 ~ 52490887 (-) True LOC111188512
XM_022662310.1 mRNA downstream 179401 52484734 ~ 52490710 (-) False LOC111188512
XM_022662540.1 mRNA upstream 42986 52760053 ~ 52765844 (-) True glrx5
XM_007252947.3 mRNA upstream 42986 52760053 ~ 52765264 (-) False glrx5
XM_007252949.2 mRNA upstream 616898 53333965 ~ 53410069 (-) False LOC103035653
XM_007252948.3 mRNA upstream 616898 53333965 ~ 53344744 (-) True LOC103035653
XM_022678355.1 mRNA upstream 972300 53689367 ~ 53715908 (-) True med23
XR_001518286.2 other downstream 1929677 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 2130439 50522899 ~ 50539672 (-) False LOC103034285
XR_002648511.1 other downstream 2130439 50535900 ~ 50539672 (-) True LOC103034285
XR_002648509.1 other downstream 2130439 50537655 ~ 50539672 (-) False LOC103034285
TU36802 other downstream 2138472 50481889 ~ 50531639 (-) True G27400
TU37335 other upstream 69405 52786472 ~ 52849906 (-) False G27821
TU37336 other upstream 69405 52786472 ~ 52827953 (-) True G27821
trnal-cag other upstream 905209 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 1333694 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 1839879 54556946 ~ 54623799 (-) False LOC111188920

Expression Profile