RNA id: trnav-cac_19


Basic Information

Item Value
RNA id trnav-cac_19
length 72
RNA type tRNA
GC content 0.50
exon number 1
gene id trnav-cac_19
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 8939743 ~ 8939814 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttctgtagtgtagtggttatcACGTTCGCCTCACACGCGAAAGGTCCTGGTTCGAAACCAGGCAGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266361 lncRNA upstream 8384 8931149 ~ 8931359 (+) True G196314
TU266330 lncRNA upstream 90117 8849360 ~ 8849626 (+) True G196286
TU266295 lncRNA upstream 135897 8803118 ~ 8803846 (+) True G196259
TU266293 lncRNA upstream 143357 8792633 ~ 8796386 (+) True G196257
TU266271 lncRNA upstream 158787 8741530 ~ 8780956 (+) True G196238
TU266364 lncRNA downstream 398255 9338069 ~ 9338819 (+) True G196317
TU266381 lncRNA downstream 438103 9377917 ~ 9427544 (+) False G196329
TU266382 lncRNA downstream 438103 9377917 ~ 9427544 (+) True G196329
TU266376 lncRNA downstream 441936 9381750 ~ 9382549 (+) True G196327
TU266492 lncRNA downstream 667708 9607522 ~ 9608821 (+) True G196396
XM_007258225.3 mRNA upstream 68544 8851232 ~ 8871199 (+) True LOC103021572
XM_007258230.2 mRNA upstream 162032 8753398 ~ 8777711 (+) True LOC103022608
XM_022682999.1 mRNA upstream 162032 8756943 ~ 8777711 (+) False LOC103022608
XM_007258232.3 mRNA upstream 199845 8694546 ~ 8739898 (+) True LOC103023428
XM_022682998.1 mRNA upstream 294676 8507235 ~ 8645067 (+) True LOC103040794
XM_022683002.1 mRNA downstream 399303 9339117 ~ 9348717 (+) True LOC103023391
XM_007230568.3 mRNA downstream 594663 9534477 ~ 9539304 (+) False mrps21
XM_022683013.1 mRNA downstream 604886 9544700 ~ 9559107 (+) True LOC111195503
XM_022683011.1 mRNA downstream 620749 9560563 ~ 9590910 (+) True LOC103027509
XM_007230566.3 mRNA downstream 663514 9603328 ~ 9638916 (+) False LOC103046991
trnav-aac_17 other upstream 118 8939554 ~ 8939625 (+) True trnav-aac_17
trnav-aac_16 other upstream 307 8939364 ~ 8939436 (+) True trnav-aac_16
trnav-aac_15 other upstream 497 8939174 ~ 8939246 (+) True trnav-aac_15
trnav-aac_14 other upstream 687 8938985 ~ 8939056 (+) True trnav-aac_14
trnav-cac_18 other upstream 876 8938795 ~ 8938867 (+) True trnav-cac_18
trnav-aac_18 other downstream 117 8939931 ~ 8940003 (+) True trnav-aac_18
trnav-aac_19 other downstream 307 8940121 ~ 8940193 (+) True trnav-aac_19
trnav-aac_20 other downstream 497 8940311 ~ 8940383 (+) True trnav-aac_20
trnav-aac_21 other downstream 687 8940501 ~ 8940573 (+) True trnav-aac_21
trnav-aac_22 other downstream 877 8940691 ~ 8940763 (+) True trnav-aac_22