RNA id: TU6831


Basic Information

Item Value
RNA id TU6831
length 2119
RNA type TUCP
GC content 0.50
exon number 10
gene id G5095
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 20630225 ~ 20637068 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aacacaaaaactaacaaaaacacaaaaaaaacccacacactCCACTTCATTCACCCTTTAACACTTGTGgaggaaacaaaacaaacaaaaagttcatCAACTAATCAAACGCAGAGAAACAATCGCAGAATGGTATACAGCCCTCGCTCCCCTCTGCAAGAGCGATATACCGTTTTATTCCGTCCACACAGAACGGGGTGCGGAGCGTCCGAACACGGTGCACGTAGGAATTCAAAAAATAGAACTCTGAGCAGCTTTTTCCTTAAATCAGGAGTCCTTAACTGTCGCAGCGGCGTCGTAACGGAAGTCTtcgtcattgttttttttttcctccgtttAGCGACGCTAACATCTTCCACGTCAACGGGAGCGAAAAAAACTGGAAGTAGCAAATCGAACAGCGAAAACGGAACAAAGTCTCCCACGGCTTCTAAGGCTTATCATCCTCTCTCCAACCGAACTTTCCAAAAATCAGCAATTCAGATCATAAAGACATTCGGtagcacaaaacaaaaaaactaaaccgaagaaaaaaaaaatctaaatcgaATCCTTCACTAGAAGTTTCTCTCGTTTCGCTTGTTATTTTCCCCTCATCTTCATCTCCAGACAGATCCTCCCTCAATTCAGACAGACATCATTCTCTCAGATATCGTTCTCCTCCCTCGAGTGGGTGGAGCCGGAGATTTAGCTGTTGTCCGATTCGTCCTCTGCCTCCCGCAGCCAGGTGAAGAAGGCGGTGACAGATTTAAGGGCGACGCCCTtgccctgctgttcggctggaTCTTTGCTGGACTCCCACTTGTAGAAGCCTTCCTCCTTGATCACGTCCTCATCGTACAGAACATCGAAGAACATCCGCAACAGATtaggTGGCTGCTCCATCTGTACCATCAGGCCCTGTAGTGCATAGAGTGCCTGCAGCTCCTTCTGCTCATCCTTAATATAACGCTGGAGCAGCTTGGCCCTCTGGGAGAGCTCCTTAGCGTCTACTTTATATGGGTTCTCACAAATGATTGCATTCTGACAGACACTGGTCATCAAAGCTCTCACAAATGTGTTAGACGACATCTGCTGCTCGTCCAGGTTAGCCTCCACCCAGTCATAAATCTGCTGATTGTCCGCCTTGTCCTGCAGCAGCACGTCCAGCTGTTTGGAGATTTCTTCTGTACTCAGAGATTTTCTGCTGCTGCCACTACTCTTCACACACTCCTCGCCCAGAGTATACTCAACCCcCTTGTCTGTCACAAATTTGTTGACGTCTTGATCCTCTGGTAGGAAGTCCTTCCAACTGAGCCCCGACTCTCTCCACATAGTTCCCACCTTCTTATCGCTCATTCCTTTGCAGAGCAGGTTGAGGATTTGAGCCAGTAAATCTCCGGCTTTATCAATAGGTGTCAGAGGCTTCGCCACTTCCCTAAAGAGTGAACCCATCGGGATTCCACCCTCATGCAGCATAGGAGTGATCAGCTCAGCCAGGTACACCCAGATATGAGGGATATCAATGGCCATGTCTTCTGCCACCTCCAAAACCTCCATAAgcCCTTTGTAGTATTGTTGTGTAGATAGTGTTCCAGCTTTGATGAGCTGGTGAAATAGTAGGCCCAGGTGCTCCCGGGCGATGGTGCTGCGCTCCAGCGTCGACTCGATCCCCGTCCGTACAAAGATGCACAGCAGAGCAGCGCAGTTCAGCTCTACCACACACTGCAGCGCCTCcttcAGGTCGTTGATGTGTAGGTACTCCTCTATGATGGCTGTAGATTTCTTCTCGAGCTCCTCAGGGCTCAGTGCGGGTTTAGATGGGGCAGGTGGGGGAGTTTGGGCAGGCTCTCTCCTCACGTTCTCCTTGCTGGGGGCTCGGTCACGGCtgttgcgctctctctctctttctctctgtctctccctctctcgttcCCGTTCCCTCTCTCGGTCCCTGTCCCGCTCGTCAGTCATGCTGGCCACGCGGCGCACGGCCTCGGCCGCTCTCTCCCGCTCGCCTCCGCGTTCATCCTTCTCCCGGCTAAAGCTCCGCTTGGTAACAGCAGGCCGGTTCCGGTCCAGCCGGTCAGGCCCACGATCGTCCCTCCGCTCAAACCGGTCTCCACGCTCACGACTCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6839 lncRNA downstream 7110 20621649 ~ 20623115 (-) True G5100
TU6682 lncRNA downstream 51768 20567834 ~ 20578457 (-) True G4981
TU6684 lncRNA downstream 55746 20571084 ~ 20574479 (-) True G4982
TU6685 lncRNA downstream 56224 20572272 ~ 20574001 (-) True G4983
TU6672 lncRNA downstream 75572 20550401 ~ 20554653 (-) True G4972
TU6845 lncRNA upstream 40257 20677325 ~ 20728100 (-) True G5104
TU6844 lncRNA upstream 43760 20680828 ~ 20728100 (-) False G5104
TU6859 lncRNA upstream 65666 20702734 ~ 20895486 (-) True G5112
TU6867 lncRNA upstream 120107 20757175 ~ 20821123 (-) True G5114
TU6894 lncRNA upstream 227684 20864752 ~ 20865243 (-) True G5141
XM_022671420.1 mRNA downstream 111750 20492572 ~ 20518475 (-) True LOC103044023
XM_022669392.1 mRNA downstream 474504 19874081 ~ 20155721 (-) True LOC103039500
XM_022671402.1 mRNA downstream 945862 19658629 ~ 19684363 (-) True LOC107197597
XM_015605446.2 mRNA downstream 974312 19652786 ~ 19655913 (-) False LOC103038464
XM_007247675.3 mRNA downstream 974312 19652786 ~ 19655913 (-) True LOC103038464
XM_022669470.1 mRNA upstream 1338 20638406 ~ 20661764 (-) True clcn2
XM_022669502.1 mRNA upstream 130201 20767269 ~ 20891792 (-) True LOC103042786
XM_022669513.1 mRNA upstream 130201 20767269 ~ 20891791 (-) False LOC103042786
XM_022669510.1 mRNA upstream 130201 20767269 ~ 20891791 (-) False LOC103042786
XM_022669517.1 mRNA upstream 130201 20767269 ~ 20891790 (-) False LOC103042786
XR_002650156.1 other downstream 137701 20492031 ~ 20492524 (-) False LOC111192876
TU6525 other downstream 974336 19652890 ~ 19655889 (-) False LOC103038464
TU6523 other downstream 981423 19639378 ~ 19648802 (-) False LOC103038769
trnap-agg other downstream 2228592 18401562 ~ 18401633 (-) True trnap-agg
TU6226 other downstream 2589459 18030362 ~ 18040766 (-) True G4621
XR_002649940.1 other upstream 1317825 21954893 ~ 21955268 (-) False LOC111192507
TU7239 other upstream 1494166 22131234 ~ 22135958 (-) False G5396
TU7240 other upstream 1494166 22131234 ~ 22200308 (-) True G5396
TU7257 other upstream 1518717 22155785 ~ 22158185 (-) True G5407
trnag-ucc_1 other upstream 1938409 22575477 ~ 22575548 (-) True trnag-ucc_1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000149_00308436_00325498.mRNA True 3385 mRNA 0.52 22 CI01000149 308266 ~ 325498 (-)
bowfin (Amia calva) AMCG00001606 True 1167 mRNA 0.56 10 CM030143.1 8659527 ~ 8665661 (+)