RNA id: XM_022671420.1


Basic Information

Item Value
RNA id XM_022671420.1
length 4136
RNA type mRNA
GC content 0.47
exon number 52
gene id LOC103044023
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 20492572 ~ 20518475 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAACCCACATTTCGGTTTACATCAGATTTAATGGATCCACATGCGGATGGAGCTTCCCTGGTTCCGGAGGTTTCTCGCAGAGGATTTTTCTATTAGCAGCTCCAGATGTTGAAGAGATGATAACTGTCTTCTCAACTAACCAACCATCTCCTGCCAGAGCTAGTCTTTAAAAGTGATGTTTTCCATCCTGCTGTTTTTCGGTTTCTGCCTGCTGCCCTGCTGCCTCTCTCATCAGTACCACTTTGTAAAGGAACCTAGAAGCTGGGCTGAGGCTCAGAGCTTCTGcagacacacatatacagacCTGGCCACTGTAAGCAACATGCAAAACGAGAGCAGGATTCTGGAGTCTGTACGCGTCACCTATAACAGCTCTGCTTGGATCGGACTGTATGATGACCCAAACAGCTCCTGGAAATGGTCTCTGGATGATGCTCAGGGCTTCAGACCAGGAGAAAAAGACTTCAGGAACTGGCTCACAACACAAGCAGGCGTGTTTAGGAAGGAGTCTGTTTGTGTGCTATCAGATGTTGGCATATGGTATCTTCAACCCTGTGAAACGCTGCTCTCATTTGTCTGCTTTGATGGAAGAAAAAATGCCACCAACAATTTGGTTCTGATACACGACAGCAAAAACTGGACTGATGCCCAGAGCTACTGCAGGAAGCATCACACGGACCTGGCCAGCATCAGGAACCGCCAAGAGAACTGCAGGATTGCAGACATAGTGACGACTAATTTTGCCTGGATCGGGTTGTACAGGACTAGACTCTGGTCGGACCAGAGCAACTCGTCTTTTAGGTTCTGGAAATCAGAAGATCCGTACGTGAGCTTAGAGAGTTTGGGTCCATCCTGCACCTCTGTGTCTTTTGGAGACTCGGGAAGATGGAGTGAGGAGAACTGCAACATCACACTCCCCTTCATCTGCCACATAGGTCCTGCTGGTTCCCTTCGTCAATACTGCTTTGTAAACGAACCCAAACGCTGGGCTGAGGCTCAGAGCTACTGCAGATCTAACCACACTGACCTGGCCACTGTAGACAACATGAACGACATGAGGAAGCTGCTGGAGTCCGCCAAAGGCACTTACAGTGGCTCCGCATGGATCGGACTCTACGATGATCCAGGGCACAGTTGGAGATGGTCTCTGGATGACCCTCAGTTCtataaagagggagagagagagttcaggaGATGGAATGGGCATCCTCTTAATGAATGTGGAATTGTCTGTGCACTGATGCTACTTAACACTCATCCACTTTATGAGGGGAAATGGATCGAGAAGTCCTGCGCTGAAGAACATCAGTTCATTTGCTACAAAGAAAGCAATGACTCTACCAGGACTTACGTTCCGATAGCTGATCCGAAAAACTGGATGGATGCTCAGAAGTACTGCAGGGAGCACTATGTCGACCTGGCCAGCGTAAGGAACCAAGAGCAGAACCTTGAGATTTTCAGGAAGACATCTGAAATCACTGCAATACAATTTGTGGATGGGGTTTGGGGAGTTTGGATTGGACTGCACAGGACCAGAACTTGGTCAGATAACAGTAACTCATCCTTCACTTACTGGAAGCAGGGGGAGCCGGATGACGGTAAGAACTCTGTGAATGACTACCTGGATCAGCACTGTACTGCAGTGTCCTTCAGCCAATCTGGACAGTGGACAGACGAGAACTGTTTGACGGCTCTACCTTTCTTCTGCTACAGCTTGAATTCCACAGCTGAGCCTCTGCCTACCCCAGCTAATGTATCTAACTCAGCGGGTACTGCATtgAATTCTACTGTTAATCCATCAACCACTTCACATATGGAAACTAAACCAACAGTGAATACCACAGTCACAATGTCCACAATGTCATATAGTGACTCTAAACCAACAgGGATGCCCAGTTCCACAGTGAATTACACAACTACGGCCTCACCCAAACCATCTACTGAACCCAACCCAGCAGtGAATACCACAGTCACGGTGTCAACGATATCATATAATGGATCAAAAACAACAGGGATGCCCAGTTTCACAGTGAATTACACAACTGTGCCCTTGCCAAAACTATCTACTGAACCCAACCCAGCAGCAAATTCCACAGTTCGGCCCTCATCCACCCCAGCTAATGTATCTAAACCAGCAGACAATTTAACAGTTATACCATCACCCACTCCAGCTAATGAATCTAAACCAGCAGtgAATTCCACAGTTGGACCCTTACCCACTCCAGCTAATGAATCTAAACCAGCAGAAAATTTCACAGTTGGACCATCACCCACCCCAGCTAATAAATCTCAGCCAACAGagatTTCCACAGTTAGACCCTCACCCACCCCAGCTAATGTATCTAAACCAACAGAGAATTCCACAATAGGACCATCACCCACCCCAGCTAATGTATCTCAACCAGCAGAGAATTCTACAGTTAGACCGTCACCCACTACAGTTACTGAACCTAAACCAACAGTGAATTCTACAATAGGACCATCACCCACCCCAGCTAATGAATCTAAACCAGCAGagaaTTCCACAGTTGGACCCTCGTCCACTCCAGCTAATGAATCTAAACCAGCAGAGAATTCCACAGTTGGACCATCACCCACCCCAGCTAATGTATCTCAACCAACAGAGAATTCTACAGTTAGACCGTCACCCACTACAGTTACAGAACCCAAACCAACAGAGAATTCCACAATTGGACCATCGCTCACCCCAGCTAATGAATCTAAATCAGCAGaGAATTCCACAGTTCCCACCCCAGCTAATGAATCTAAACCAGCAGaGAATTCCACAGTTCCCACCCCAGCTAATGAATCTAAACCAGCAGAGAATTCCACAGCTGGATCCTCACTCAGCCCAGCTAATGAATCTAAACCATCAGATAATTCCACAGTTGGACCCTCACCCACCCCAATTACTGAATCTAAACCAACAGAGAATTCCACAGTTAGACCATCACCCACCCCAGCTACTGTATCTAAACCAGCAGaaaattcCACAATTGGACCATCACTCATCCCAGCTAATGAATCTAAACCAGCAGAGAATTGGAACACAATTGGACCCTCATCCATCCCAACTAATGAGTCTAAACCAACAGAGAATTCCACAGTTAGACCATCACCCACCCCAGCTAATGAATCTAAACCAGCAGAGAATTGGAACACAATTGGACCCTCATCCATCCCAGCTAATGAGTCTACAACAGTAGcACACAATTCCACAATTGGACCATCACCCACCTCAGCTAATGCCTCTAAACTAACAGAGAATTCCACATATGGACCTTCACCCACCCCAGCTAATGAATCTAAACCAGCAGAGAATTCCACATCTGGACCCTCACCCCCCCCAGCTAATGTATCTAAGCCAGCAGAGAATTTCACAATTGGACCTTTACCCACTCCAGCTAATGAATCTAAAGCAGCAGTGAATTCCACAGTAGGACCATCACCCACCCCAGCTAATGAACCTAAAGCAGCAGAGAATTCCACAGTTGGACCCTCAATCACCCCAGCTAATGAATTTAAACCAGagaATTCCACAGTTAGACCATCAACCACTCCAGCTAATGAATCTAAACCAgcagaaaATTCCACAGTTGCCCCCTCACCCACCCCAGCTAATGAATCTAAACCAGaGAATTCAACAGTTAGACCATCAACCACTCCAGCTAATGAATCTAAACCAGCAGGGAATTCCACAGTTGAACCTTCACCCACCCCAGTTACTGAATCTAAACCAGCAGAGAATTCCACAATAGGACCCTCACCCACCCCAGCTAATGAATCTAAACCAGCAGAGAATTTCACAGTTAAACCTTCACCCACCCCAGTTACTGAATCTAAACCAGCAGaaaattcCACAGTTGTTCCCTCTCCCACCCCAGCTAATGAATCTAAACCAGCAGAGAATTCCACAGTTGGAGCCTCATCCATCCCAGCTAATGAGTCTACAACAGTAGAGAATTCCAGAGTTGGACCCTCAGCCACCCCAGCTAATGATTCTAATTCAGTAGaGAATTCCACAGCTGATCCCTTACCCATCCCAGCTAATAACTCTAATCCATCAGaGAATTCCACAGTTGGACCCTCAGCCACCCCAGCTAATGATTTTAATTCATATGAAATACGTGTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6632 lncRNA downstream 258 20486594 ~ 20492314 (-) True LOC111192876
TU6607 lncRNA downstream 112667 20379286 ~ 20379905 (-) True G4937
TU6604 lncRNA downstream 133384 20358900 ~ 20359188 (-) True G4934
TU6601 lncRNA downstream 190165 20301862 ~ 20302407 (-) True G4931
TU6591 lncRNA downstream 242227 20249829 ~ 20250345 (-) True G4921
TU6648 lncRNA upstream 2742 20521217 ~ 20524904 (-) True G4964
TU6677 lncRNA upstream 21987 20540462 ~ 20540940 (-) True G4976
TU6672 lncRNA upstream 31926 20550401 ~ 20554653 (-) True G4972
TU6682 lncRNA upstream 49359 20567834 ~ 20578457 (-) True G4981
TU6684 lncRNA upstream 52609 20571084 ~ 20574479 (-) True G4982
XM_022669392.1 mRNA downstream 336851 19874081 ~ 20155721 (-) True LOC103039500
XM_022671402.1 mRNA downstream 808209 19658629 ~ 19684363 (-) True LOC107197597
XM_015605446.2 mRNA downstream 836659 19652786 ~ 19655913 (-) False LOC103038464
XM_007247675.3 mRNA downstream 836659 19652786 ~ 19655913 (-) True LOC103038464
XM_007247676.3 mRNA downstream 843750 19639365 ~ 19648822 (-) True LOC103038769
XM_022669470.1 mRNA upstream 119931 20638406 ~ 20661764 (-) True clcn2
XM_022669502.1 mRNA upstream 248794 20767269 ~ 20891792 (-) True LOC103042786
XM_022669513.1 mRNA upstream 248794 20767269 ~ 20891791 (-) False LOC103042786
XM_022669510.1 mRNA upstream 248794 20767269 ~ 20891791 (-) False LOC103042786
XM_022669517.1 mRNA upstream 248794 20767269 ~ 20891790 (-) False LOC103042786
XR_002650156.1 other downstream 48 20492031 ~ 20492524 (-) False LOC111192876
TU6525 other downstream 836683 19652890 ~ 19655889 (-) False LOC103038464
TU6523 other downstream 843770 19639378 ~ 19648802 (-) False LOC103038769
trnap-agg other downstream 2090939 18401562 ~ 18401633 (-) True trnap-agg
TU6226 other downstream 2451806 18030362 ~ 18040766 (-) True G4621
TU6831 other upstream 111750 20630225 ~ 20637068 (-) True G5095
XR_002649940.1 other upstream 1436418 21954893 ~ 21955268 (-) False LOC111192507
TU7239 other upstream 1612759 22131234 ~ 22135958 (-) False G5396
TU7240 other upstream 1612759 22131234 ~ 22200308 (-) True G5396
TU7257 other upstream 1637310 22155785 ~ 22158185 (-) True G5407

Expression Profile