RNA id: TU7240


Basic Information

Item Value
RNA id TU7240
length 529
RNA type TUCP
GC content 0.41
exon number 5
gene id G5396
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22131234 ~ 22200308 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGATACTGGgCCGGTGTTCTATCATTTCATCCTACCCATCGAGTGGTCCTACCGAGGCttactgcgcatgcgcacatcatTTTTACGTCAAATGACGATGGTTTTCGGGTACGCCCATAATTTTATCCTACCTGGATATAAGTACGCCATGGAAAAGAAGTGGGAAACAGTATACAATCTTCTGTCTTCGGGATCATACCCATCAGACTTTGACAAATCACAGCGGCAGAACCTTCGGAGATATGCCTCCAATTTTCAGATAAAGGATGGAGATCTGTTTTTTGGGAATCAAAGAAGGGTTATTAAAACCAAAGAAGAAGCCATGTTGCTGTTCCAGGAGTTTCATTCCTCTCCCATGGGTGGACATTCAGGAATCTTAAAAACACGGACAGCCATGTGTTCCAGATTTTACTGGCATGGAATGTCAATCGACATTGACAACTggGTACTGGAATGTGATAAATGCCAGAAAATTGGAAAGCCTTTGACCGCTGCACAACCACTACAGTGCATTAAGgtaaataattgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7247 lncRNA downstream 6984 22121889 ~ 22124250 (-) True G5401
TU7246 lncRNA downstream 8821 22121889 ~ 22122413 (-) False G5401
TU7245 lncRNA downstream 10765 22118260 ~ 22120469 (-) True G5400
TU7231 lncRNA downstream 23018 22078354 ~ 22108216 (-) True G5392
TU7464 lncRNA upstream 273172 22473480 ~ 22603357 (-) False G5537
TU7476 lncRNA upstream 291742 22492050 ~ 22496877 (-) True G5541
TU7463 lncRNA upstream 394691 22594999 ~ 22603357 (-) True G5537
TU7506 lncRNA upstream 421805 22622113 ~ 22628182 (-) False G5565
TU7519 lncRNA upstream 437750 22638058 ~ 22641835 (-) True G5570
XM_022669727.1 mRNA downstream 757 22128934 ~ 22130477 (-) True LOC111192513
XM_022669700.1 mRNA downstream 84256 22037862 ~ 22046978 (-) False parl
XM_007247640.3 mRNA downstream 86668 22036488 ~ 22044566 (-) False parl
XM_007247639.3 mRNA downstream 86668 22037862 ~ 22044566 (-) True parl
XM_022669682.1 mRNA downstream 176453 21946786 ~ 21954781 (-) False LOC111192507
XM_015605665.2 mRNA upstream 449 22200757 ~ 22210913 (-) True fzd4
XM_007248598.3 mRNA upstream 143731 22344039 ~ 22366316 (-) False pdgfd
XM_007248597.3 mRNA upstream 143731 22344039 ~ 22366316 (-) True pdgfd
XM_015605657.2 mRNA upstream 300790 22501098 ~ 22506707 (-) False msantd4
XM_015605656.2 mRNA upstream 300790 22501098 ~ 22506623 (-) False msantd4
XR_002649940.1 other downstream 175966 21954893 ~ 21955268 (-) False LOC111192507
TU6831 other downstream 1494166 20630225 ~ 20637068 (-) True G5095
XR_002650156.1 other downstream 1638710 20492031 ~ 20492524 (-) False LOC111192876
TU6525 other downstream 2475345 19652890 ~ 19655889 (-) False LOC103038464
TU6523 other downstream 2482432 19639378 ~ 19648802 (-) False LOC103038769
trnag-ucc_1 other upstream 375169 22575477 ~ 22575548 (-) True trnag-ucc_1
trnag-ucc_2 other upstream 375767 22576075 ~ 22576146 (-) True trnag-ucc_2
trnag-ucc_3 other upstream 385829 22586137 ~ 22586208 (-) True trnag-ucc_3
TU7503 other upstream 407461 22607769 ~ 22625664 (-) True G5565
TU7508 other upstream 407461 22607769 ~ 22621326 (-) False G5565

Expression Profile