RNA id: XM_022669682.1


Basic Information

Item Value
RNA id XM_022669682.1
length 724
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC111192507
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 21946786 ~ 21961465 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttctgttggACACAGGTCTAGAAACTAGtatgttttgggttttttttatcttagaaGGTGCATGTCCACGCcaaaagaagcagaagaggTCTTCAAGAACTTCCTCCCGAGAAGGTGATTTGAAAAACACTGAAGACGATTCTTGCGGAGAACAGCAGTCAGaaGGTGCATGTCCACGCcaaaagaagcagaagaggTCATCAAAAACTTCCTCCCGAGAAGGTGATTTGAAAAACACTGAAGACGATTCTTGCGGAGAACAGCAGTCAGATCATAAACACACAGGAAAGCCCAGGCGATCATGGACCAACAGAGAGAAGGAGGCAGTGTGGCGTCACCTGGCCAAGCATCGTACCTTAAAGAAAGTCCCGGGAAAAGAAGACTGCCTTCAGTGCATCCAAGCAGAGTATGCTTTGAAGAACAGAACATGGAAAGATGTCAAACATTTTGTTTACAACACTATTACAACAGAGAAGCGAAAAGCTGGCTCTCTCATTTCAAATGTCTAAAGAACATTCTGAACATGTTCTGAACATGAACATCCGTTCATGTTAATTTGTTCAAGTACAGTTAGTTACTCTGTTTATTACCCTAATTAGGGGTTTAAGAATATAGTATTGATGTGATTGAgtgatgttttgttttgcaaGACTACATTTGACTGACTACTGATTTTCAAAAATACAgatacttaagcaataatacactcgaggttcgtgctat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7151 lncRNA downstream 514 21941517 ~ 21946272 (-) True G5352
TU7142 lncRNA downstream 514 21942147 ~ 21946272 (-) False G5352
TU7137 lncRNA downstream 2119 21942147 ~ 21944667 (-) False G5352
TU7141 lncRNA downstream 2472 21941517 ~ 21944314 (-) False G5352
TU7228 lncRNA upstream 86873 22041654 ~ 22108216 (-) False G5392
TU7231 lncRNA upstream 123573 22078354 ~ 22108216 (-) True G5392
TU7232 lncRNA upstream 145620 22100401 ~ 22105001 (-) True G5393
TU7245 lncRNA upstream 163479 22118260 ~ 22120469 (-) True G5400
TU7246 lncRNA upstream 167108 22121889 ~ 22122413 (-) False G5401
XM_022669663.1 mRNA downstream 5980 21916366 ~ 21940806 (-) True inppl1
XM_007247647.3 mRNA downstream 128839 21776231 ~ 21817947 (-) True stard10
XM_022669617.1 mRNA downstream 180196 21655023 ~ 21766590 (-) False arap1
XM_007247640.3 mRNA upstream 81707 22036488 ~ 22044566 (-) False parl
XM_022669700.1 mRNA upstream 83081 22037862 ~ 22046978 (-) False parl
XM_007247639.3 mRNA upstream 83081 22037862 ~ 22044566 (-) True parl
XM_022669727.1 mRNA upstream 174153 22128934 ~ 22130477 (-) True LOC111192513
XM_015605665.2 mRNA upstream 245976 22200757 ~ 22210913 (-) True fzd4
TU6831 other downstream 1309718 20630225 ~ 20637068 (-) True G5095
XR_002650156.1 other downstream 1454262 20492031 ~ 20492524 (-) False LOC111192876
TU6525 other downstream 2290897 19652890 ~ 19655889 (-) False LOC103038464
TU6523 other downstream 2297984 19639378 ~ 19648802 (-) False LOC103038769
trnap-agg other downstream 3545153 18401562 ~ 18401633 (-) True trnap-agg
XR_002649940.1 other upstream 112 21954893 ~ 21955268 (-) False LOC111192507
TU7239 other upstream 176453 22131234 ~ 22135958 (-) False G5396
TU7240 other upstream 176453 22131234 ~ 22200308 (-) True G5396
TU7257 other upstream 201004 22155785 ~ 22158185 (-) True G5407
trnag-ucc_1 other upstream 620696 22575477 ~ 22575548 (-) True trnag-ucc_1

Expression Profile