RNA id: TU7245


Basic Information

Item Value
RNA id TU7245
length 932
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G5400
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22118260 ~ 22120469 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgatttttaggttttcatttcACACGCTTAAAatatagatcactttgtgtgtaatatatctttataatatacgagtttcacatttttaactgaattactgaaatagtaACTTTGTGAGATGGCCCTGTACATTGCAGTCTAAGGTTTACGATGCAGCAAGTTTTTCACTTGCAATAAAGACTAGTATTCGGTTACTGTGGAGCTGGTATCAGAATTAAGAGGAAAAACTGCATGGACATTTTACCAACTTTTCTCTAAAAGACAAGAAGGCACTTGAGTGTGTTCTTGACAGTACAGAAGAAGTTCTGATGGATCTTCATGATTGACTGTTCACACGATCGCCacctagaaaaaaatatatacatttatttatcacaAAGAAATTCAACAATAACAAGATTTATGACTTATTTGGGGAAAAatcatagtaaataaatatagattactacaaaatcacagttttaaacaaaatacacagaTTTTACAACTAACAGAGTAAATGTACCCTGAATATCAGGACCAGTACAAAGAGTAACACAGGCTATTGAGGAATATGAATAAAGTTATTAGCACTATAGAGTGCATGAACATGAAAACGATATAAGATACATATCCTGCACATGAAATACCCACCAGAccaaccaggtatttggataccagatatatataaatcagattaaactgcactgacatgaaatacccgccagaccaaccaggtatttggataccagatatatataaatcagtttaaactgcactgacatgaaatacccgccacaacatccaggtatttggataccaagatatatataaatcagattaaactaaactacatGAAATACCTGCCAgaccatccaggtatttggataccagatatatataaatcagattaaactaaactaacatgaaatacctgccagaccaaccaggta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7228 lncRNA downstream 10044 22041654 ~ 22108216 (-) False G5392
TU7231 lncRNA downstream 10044 22078354 ~ 22108216 (-) True G5392
TU7232 lncRNA downstream 13259 22100401 ~ 22105001 (-) True G5393
TU7151 lncRNA downstream 171988 21941517 ~ 21946272 (-) True G5352
TU7142 lncRNA downstream 171988 21942147 ~ 21946272 (-) False G5352
TU7246 lncRNA upstream 1420 22121889 ~ 22122413 (-) False G5401
TU7247 lncRNA upstream 1420 22121889 ~ 22124250 (-) True G5401
TU7265 lncRNA upstream 72548 22193017 ~ 22193934 (-) True G5414
TU7464 lncRNA upstream 353011 22473480 ~ 22603357 (-) False G5537
TU7476 lncRNA upstream 371581 22492050 ~ 22496877 (-) True G5541
XM_022669700.1 mRNA downstream 71282 22037862 ~ 22046978 (-) False parl
XM_007247640.3 mRNA downstream 73694 22036488 ~ 22044566 (-) False parl
XM_007247639.3 mRNA downstream 73694 22037862 ~ 22044566 (-) True parl
XM_022669674.1 mRNA downstream 161940 21946786 ~ 21956320 (-) False LOC111192507
XM_022669727.1 mRNA upstream 8465 22128934 ~ 22130477 (-) True LOC111192513
XM_015605665.2 mRNA upstream 80288 22200757 ~ 22210913 (-) True fzd4
XM_007248598.3 mRNA upstream 223570 22344039 ~ 22366316 (-) False pdgfd
XM_007248597.3 mRNA upstream 223570 22344039 ~ 22366316 (-) True pdgfd
XM_015605657.2 mRNA upstream 380629 22501098 ~ 22506707 (-) False msantd4
XR_002649940.1 other downstream 162992 21954893 ~ 21955268 (-) False LOC111192507
TU6831 other downstream 1481192 20630225 ~ 20637068 (-) True G5095
XR_002650156.1 other downstream 1625736 20492031 ~ 20492524 (-) False LOC111192876
TU6525 other downstream 2462371 19652890 ~ 19655889 (-) False LOC103038464
TU6523 other downstream 2469458 19639378 ~ 19648802 (-) False LOC103038769
TU7239 other upstream 10765 22131234 ~ 22135958 (-) False G5396
TU7240 other upstream 10765 22131234 ~ 22200308 (-) True G5396
TU7257 other upstream 35316 22155785 ~ 22158185 (-) True G5407
trnag-ucc_1 other upstream 455008 22575477 ~ 22575548 (-) True trnag-ucc_1
trnag-ucc_2 other upstream 455606 22576075 ~ 22576146 (-) True trnag-ucc_2

Expression Profile