RNA id: XM_007245073.3


Basic Information

Item Value
RNA id XM_007245073.3
length 1638
RNA type mRNA
GC content 0.47
exon number 7
gene id znf414
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 2423713 ~ 2434401 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatttttcatgttttaaacacttttattaattttgcatTAACTTCTCGCACATCTCCATCTGTATTAAAAAGTCGAGAATCAGCTGGTCTGCAGGAGTTCTGCATCTAAAGCCCAGAATCTCATTTCTATCCTGCACTGAAAGCTGATCCACCATGCAGGGCTGCCATCTGCCCTGTTCGCTGTATGGCTGCAGGCGGACCTACACTAAGCCTGAAGCGCTCGCCAGTCACCTGCAGGATCACCATCGGATCCCTGCGCAGTCTCTTCCTGgGAAGTCCTTCCTGTGCTCCACAATTGGCTGTGAAGCCACCTTCTCCAGCATGCAGCAGCTGATGGATCATATGAGGCATCACCATAAGCCCAATTGCTTCTTTCTatgTGAAAGCTGTCGGGCAAAGCTACGCTCGTACCGCACCCTCCTTAAACACCTGCAGACGTGTGCTAAAGTGGCCAAGAAGGCTGCGAAGTTAGAGCCTGGAGCAGGTCCTGACATGGGTCCCTCTGGTGTCCCACTAGCCCCAATGGATATGGAGCTCTCTGGCCCCCTACAGGCCCCAGGTCAGCCTGAGCAGATGGAGATGCAGATGCAGGCTCTGCCCACACTGATGCCAAATTCAGCAGCATTAGTCCACCCCAATCAGCATGTCCAGCAACCTCCAACCAACGGTGCTTCACAAGACCCCGCCTCCTCCAGGCCTCTGTCAGAGTCCATGGCTTCTCTGGAGCCAAATCTACCCCAGAGTGTGTCGGGTCAACCAGAGGGCCCCTACAGCCCTTTCCCACCCAGTCTGTCTCCAATACCCCCACCCCCCCTGCCGGACCTGTCCCAGCCGGAGCAGCAGAACCAGTGGCCCCCCAGAATGGGCCAGCCTGTCCTGCCAGCTTCTCCACCTGGATCCAACGCAGTCTGGAGGAAGAACCAAGGTCAGTCCTTCAGCTGCCGAATCCTATGGGAGCACACCAGGGGGCGCTACAGCTGCTTACAGTGCGGCCACTGCACCCCCGACCGCAAGGAGATGACTACACACATTGAGAGCCAGCACAAGAGCCCAAAACCAAACACAGACAACGACGCAGTGGTCAACTCACATTTACAGATGAATAAAAACCAGTCAGACTCAGAAAACTCCAGTTACACACAGCTCTAACTCTACCTTCAGTCCTGAAATAAGTCATTTACAGCCTGGGCACTTGTGTGATGTCTTAACTCAGATCTGTCTTAGTGTACAGTGTGATTGTGGAAAAGCCACACTTGACTGCATGCTGTTTATAGAGAGCTAGCAGCTCAGTGCCGTTTAAAGCTTGTGAAATATTAAAGACCTGTATTTACAGTTTGTGTTAATTGTTATAGCAGAAACATTTGTACACTAATTGCTGTTAGTTCATATTAAACCTATTCTTTTTAGTAAAACTGATGCATTTGTAACTGCAGGTATGATTAATAAGTATATTGTTCATTAATATGTATTagtgtaatacagtaatatctTTTTAACAACAGTTTTTGCATTATAAGCAGATATTCTGGCATGTAGCAGTTTTTCAGTTAATATGTGCATTAATGTCAGTGTAATCATTGtgtctttatttctttgtattgtattttcataatcaaaaaataaatgtaaaaaatagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU981 lncRNA downstream 20396 2400655 ~ 2403317 (-) True G748
TU983 lncRNA downstream 23287 2398073 ~ 2400426 (-) True G750
TU904 lncRNA downstream 171134 2250881 ~ 2252579 (-) True G696
TU901 lncRNA downstream 176907 2239442 ~ 2246806 (-) True G694
TU889 lncRNA downstream 230202 2186107 ~ 2193511 (-) True G684
TU1039 lncRNA upstream 46984 2481385 ~ 2487165 (-) True G780
TU1043 lncRNA upstream 57214 2491615 ~ 2493843 (-) True G782
TU1087 lncRNA upstream 88916 2523317 ~ 2526196 (-) True G806
TU1088 lncRNA upstream 90586 2524987 ~ 2526196 (-) False G806
TU1090 lncRNA upstream 116592 2550993 ~ 2554687 (-) True G807
XM_022672317.1 mRNA downstream 1072 2405363 ~ 2422641 (-) True LOC103037050
XM_007245074.3 mRNA downstream 28348 2376247 ~ 2395365 (-) True LOC103036044
XM_022672202.1 mRNA downstream 50758 2324606 ~ 2372955 (-) True LOC103037376
XM_007245076.3 mRNA downstream 311554 2103470 ~ 2112159 (-) True LOC103036651
XM_022671381.1 mRNA downstream 350070 2067978 ~ 2073643 (-) False thap4
XM_022672560.1 mRNA upstream 105415 2539816 ~ 2542341 (-) True LOC111193163
XM_022672769.1 mRNA upstream 265957 2700358 ~ 2718035 (-) True LOC103035527
XM_022672993.1 mRNA upstream 400911 2835312 ~ 2892356 (-) True fam129a
XM_007245063.3 mRNA upstream 482388 2916789 ~ 2928066 (-) True LOC103032964
XM_007245060.3 mRNA upstream 529175 2963576 ~ 2970340 (-) False LOC103032016
TU795 other downstream 550586 1864515 ~ 1873127 (-) True yipf1
XR_002648446.1 other downstream 1567553 855579 ~ 856160 (-) True LOC111197534
TU266 other downstream 1752998 652484 ~ 670715 (-) False LOC103037308
TU1089 other upstream 115815 2550216 ~ 2554687 (-) False G807
TU1203 other upstream 476353 2910754 ~ 2968477 (-) True LOC103032016
TU1713 other upstream 1466482 3900883 ~ 3909663 (-) False wdfy1
TU1773 other upstream 1665364 4099765 ~ 4101566 (-) True G1308
TU1837 other upstream 1842942 4277343 ~ 4304762 (-) False LOC111193783

Expression Profile