RNA id: XM_022662993.1


Basic Information

Item Value
RNA id XM_022662993.1
length 4622
RNA type mRNA
GC content 0.49
exon number 25
gene id LOC103025751
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13734473 ~ 13750279 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGGAGCTGCTGAGTGAGCCGCTGTATGGCGCTAGCTGTGTTAGCTGGGTAGCTAGCGGTCTGGTAATAATATCGCGGTGGAGTCAAATGTTATTAAAACTACAGATAATAATTTAATTCGTCTGAGAGCGGAGACAACCAAACACAGCCTTACGGTCTCAGTAACCTAATATACTGCTGTCATGGAGGAGCAAGGAAATAGTGATATTGAAGTAACTGTCAAAACTCTGGACTCTCAGAGCAGAAGTTACACTGTCAGAGCACAGATGACAGTGAAAGAGTTTAAAGAGCATATATCCACATCTGTTGGTATACCCGTCGACAAACAGAGGCTTATCTACCAGGGAAGAGTGCTTCAGGATGAGAAAACTTTAACAGAATACAATGTGAATGGCAAAGTCATCCATTTGGTGGAGCGAGCCCCCCCTCAGACAAACCAGCCAGGATCAGCTTCAGGTGGAGTACCTGGGACTTCAGGTAGTCCACAGGCAGGAAACGGCAGCTCCTCCACAACCTCTCAGGGGATGCCACATGGACCCACTCATGACCGCAATGCCAACAGCTATGTAATGCTTGGTACCCTTAATCTCCCTGTCAACATTATGGACCCACAACAAATTCAGATGTCTATCCAGCAAATGATGTCAGGTCTTGGAGAAGGTGTTAGAAATACACGAGTCAGCACAAGTACTGGGCCCAGCGGCTCTGTGAATGTGCATGTTGATATGGACCAGTCCCTGCAAAGTGAGCCAAGGCTTCGGCTACTCCTAGCTGAGAACTTGCTGAGGGACACCATTGCCCTGATTCAAAGACTTGAGGTAGGTCAGCCTGCAGATGGCTCTGCGCCTCCTGAGGATTCTGCACCTCCTCCAACTTCATCCACCTCCACACCTTCTCCCTCTGTCCAGCCAATGGACACTTCCCCACCTCCATCCAGCTCCCCTCCATCATCTGCAGCTGCTACTGATACTGAGGGTGCACCTCCTCCTACTTCTTCAGGTCCCAGTCACCCTAGCCCTGCAGAGCTAGTAGAAATGTTAGCAGAGCTGAGAAGAGTAGAAGAGAGACTCCAGCCCTTCATCCAAAGAGCCCACACTATTCTTGAAGCAGCAACAACTGCTGACTACAACAATAATGAGAGGGAGGAGGACCAGCGTGTTTTAAACCTGGTCGGAGAGGCTCTTCGGCTCCTAGGAAACGCTCTGGTTGCTCTGAGTGACTTGCGCTGTAATCTGTCAAGTGCTCCTCCCCGTCACTTGCATGTGATCCGGCCCATGTCTCACTACACTTCCTCTGTCCTGACACCAGGTGGAGTGCATCACATGCCCATGCAGGTTAATCTTGGAACCACAGTGACCATGTCAGGCAATGGCAGACCACCAGCAGAAAGTCAGCCTCAACCGACTGGCCAGTCAGAGCAGCAAGGACAAACCCCCAACCCACAGCCAGGTATGGCCAATCAGCAAACGGGGCAGCCAGGGCCCAGAGTGATACgaataagccatcaaaccatggAGCCAGTGGTCATGATGCAGATTAACGTTGATGatGCTGGGAATGCTGCTCAAAACACGACTGCTGGACAACCGAATGCAGCTGGTACTGGACAACCTGGTGTAGCTCCTAATATTCAAATACCGGGTCTACCTCCAGAGTTCATGCAAGCCATTGTAAACCAAGTAACCCAGCAAGCCATGGCCATGGCAAGTGCTGCCTCTGCTGGACAGCAGGGGCAACAGATCCCTACTCCTGGTACAGGCCCTGCTGCCCCAGGCACTGCTGGTACAGGCCCTGCTGCCCCAGGTCCTGCTGGTACAGGGCCTGCTGCCCCTCCCATGCCCCCAAACCCTGCTCAGGCTCGGGTAGTTTTCACACTTCCTCCTTTCGCTCACCGGATGGCAACCCCTTCTTTCACCACCAGAGGCACCACCATCAATCTGAGAGCTGCTGTTCCACCAACAATGGGCCAACAGCCAGGCCAGGCACCACCCCTGAATCCAGCTGCTCTCAACCAAATGATTAGTGTTCTGGTGGGGCAACTCCTGACAGGAGCTTCTGGTCAGAATATGGCCAGTCAAAGCActacctcctcttcctcctcttcctcccacACGTTCACATTCTCTACCTCTTCatcctcttcatcatcatcctccaccacttcctcctcctccacctcatCCTCATCAACCTTCCCACCaacatctgctgctgctgctgctgctactgccacCAGTGCCTCAGgacccacacactccacaggcCCCACTGCAAGCTCTACTTCGCAGCCGAATGCTGCCCCTATGCCTCCTCAAGGGGCTCCTTTCGGGGGCGACCTGGACCAGATTCTGGGCTCTCTCCTGGGAGGAGGGTTGGCTGCTGCTGGTCAGGCCCCTGGAGCTAGTCCTTCTGTTACTGTGACCATGCCAGGAATACCTGCCTTTATTCAGGGTGTCACCGACTTCATACAGgcTTCTCAACAAGCCAACTTTCAGCCACCCACAGAGCAACCCGCAGCTCCTACCCCTCCTCCGACTAATAACCCACAATCAAACCCTGAGGCGGGTGCAGCTGAAGAAGTCATGAACACTGAGCTCTTTACTGGGATAGTACAGGGCGTCCTCTCCACCATGATGGGCTCTCTGGGTGCCCCTCAGAACAATACAGAGAGCATTGCACAGTTCATCCAAAGACTCTCCCAGACCAGCAACATTTTCACCCCCAGCACAGGAGAAGCCATGGGTTTCTTTGGGGATCTGTTAACTCTGGTGTGTCAGAACTTCTCTATGGTGGACATGGTCCTGCTCCTCCACGGACAGGCACAGCCCCTGAGCCGCATTCAGCCCCAATTGGCCCAGTTCTTCTCTGAGCACTATCTGCAGGGCCGAGAACCCACAGACCCTAACATATCTGCAGCTTCTGATGAACTGATAAGAGAACTTGACGAATACATAACAGAGAGTTTTtcAACAGTTACAGTCCGGGAAGGGGTTGACATCACTCAGACAAATCGTTTGTTTCTAAGACAGCAACTTACAGGCATAGCTACACACATTCTGCGCTGCACAGATCACACATTTGGACCACGCTTGCTGCAGCTGTGTAACCGAGCTCTGTTTGAGTGTTTGGCTCTCAATCTGTACTGCCTGAGAGGAGAGCAGAATGCCCTCACTGCAGTAATCAACAACCGCATAaGAACTATGTCAGCAGAGGTGAACCCAAGTGTGGTGAGCTGGTTGACTAGTATGATGACTATGAGACTGCAGGTCATTCTGGAGCACATTCCAGTTACAGAGGAACAAATTCTCCATTACCTTGTTCATGCTCGGAATGAAGAGGCGAGAGAGGTCCCCCCACCAGAACCAGTAGAGCTTGAGTCTGTGGAGATGGAGGACACACGCTCTCCCACTCCAGCTACCACTGCAGAAGAGGCCATGGCTACCTCCCAGGAGGCAGGAGCAGTTGGAGGACTGGCTGAAGAAACAGTCGGGGCTACTGGTGGGGAGGAGCCTGTGGGAGAAGCCGAAGCCTGGGCCGCTGCTTTACCTCCTGATTGGGTTCCCATTATCAGACAGGATATGCTTACCCAGAGGAAGATAAAGGCTCAGCCTCCTCTATCTGATGCATATTTGCAAGGGATGCCTGCCAAGAGGAGAAAGACAGCACAAGGTGATGGCCCCAGGCTCACTCTCTCAGAGGCAGTGAGCCAAGCTGCGAGGTCAGCTGGTGTCACCCCTGTCACATCTTCCAGTGCCTTACAAGGTGATCTCGAACGACCTGAACTTCAGGAAGCATATTCACAACAGGTAAAAAATGACATCAAGAAACGTGTGAAAGAAGACCCTGACTTTAATCCTAGAAGGttccccaacacacacaaagcCTTTTCACCAGACTCATAACCTGCAATACATTTTTGCACCTTagctcttatttttgttttgtgtgtgcacactttttttccttttaattctccaaattaaaaaaacaaatctacaGTTTCAGCTATCAGAGGTTTTTATGCTGTCTTGAGGGTGGCCTCAtctgtaattaaaatgtatttatattgtagAATGGCCAAGTGCAGCCTTATAACTGTCTTGTCGTCCTTTGATGTTAAAAGGGATGCAATTACTAAACTCAAACAGGGCTTAAATCAAACAGTGGCAATGAGCAAAGTGTATAATGTCAAAAATATAACACTGACACTTGAATTACTtccacatgaaaaaaaatctgtgactTTTATAGCAAGAGTTGTCATTAAGGGCAAGAGAAATCACAGCAAAAAATTAACATGGCGTATTGCTTTTTTAATGATAGTCTGTACATCATCTTGAATATTCCCTGTTTGCCAAGATTGTGATACACACGTACTAATGCTTTACagatatatttaaacaatttcaCACCATATACATTATTGAATTGACATTTTACTAGCTTGCATCTTTGTTTCagcagttattttaaaataaagccaGGGGGAATCAGTTAAATTATTACAGAAGTTATGTTATTgttaaaagtattattttattactcttcATCTTGCCTGCTGTGTcattaagagactacttcagtgtGAAATGCCAGAAAATAAACAGCTTTGCAACTAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4572 lncRNA downstream 13448 13680519 ~ 13721025 (-) True G3469
TU4577 lncRNA downstream 42591 13689761 ~ 13691882 (-) True G3474
TU4557 lncRNA downstream 59901 13674108 ~ 13674572 (-) True G3459
TU4534 lncRNA downstream 162101 13544500 ~ 13572372 (-) False slc43a2
XR_002652513.1 lncRNA downstream 349526 13381254 ~ 13384947 (-) True LOC111197623
TU4757 lncRNA upstream 373894 14124173 ~ 14133237 (-) False LOC111189390
TU4755 lncRNA upstream 378059 14128338 ~ 14133237 (-) False LOC111189390
TU4758 lncRNA upstream 378059 14128338 ~ 14131354 (-) False LOC111189390
TU4803 lncRNA upstream 497363 14247642 ~ 14247859 (-) True G3610
XR_002649055.1 lncRNA upstream 530753 14281032 ~ 14318897 (-) True LOC111190296
XM_007260880.3 mRNA downstream 21098 13703983 ~ 13713375 (-) True LOC103043894
XM_007260885.3 mRNA downstream 75549 13591095 ~ 13658924 (-) False myo1c
XM_007260887.3 mRNA downstream 84338 13591095 ~ 13650135 (-) True myo1c
XM_007260886.3 mRNA downstream 103460 13591095 ~ 13631013 (-) False myo1c
XM_007260884.3 mRNA downstream 116773 13591095 ~ 13617700 (-) False myo1c
XM_022663131.1 mRNA upstream 377090 14127369 ~ 14132535 (-) False LOC111189390
XM_022663171.1 mRNA upstream 377090 14127369 ~ 14132535 (-) False LOC111189390
XM_022663105.1 mRNA upstream 377090 14127369 ~ 14132534 (-) True LOC111189390
XM_007236807.3 mRNA upstream 388170 14138449 ~ 14168938 (-) True LOC103035060
XM_007236813.3 mRNA upstream 505036 14255315 ~ 14279290 (-) False git1
TU4408 other downstream 598832 13130212 ~ 13135641 (-) True LOC111197384
TU4317 other downstream 975960 12740144 ~ 12758513 (-) True G3297
XR_002651739.1 other downstream 2440591 11281209 ~ 11293882 (-) False sarm1
TU3680 other downstream 3050008 10662422 ~ 10684465 (-) False LOC103025442
TU3640 other downstream 3151726 10582289 ~ 10582747 (-) True G2783
XR_002648804.1 other upstream 374503 14124782 ~ 14132536 (-) False LOC111189390
XR_002648814.1 other upstream 374849 14125128 ~ 14132536 (-) False LOC111189390
XR_002648788.1 other upstream 377090 14127369 ~ 14132536 (-) False LOC111189390
XR_002648822.1 other upstream 377158 14127437 ~ 14132536 (-) False LOC111189390
TU4805 other upstream 533344 14283623 ~ 14284225 (-) True G3612

Expression Profile