RNA id: XM_007249982.3


Basic Information

Item Value
RNA id XM_007249982.3
length 2451
RNA type mRNA
GC content 0.50
exon number 1
gene id bhlhe23
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 23451233 ~ 23453683 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCCAGGGCGGAGGGTGAGACGCGGTGCGGGGagcccacacacactcatatatacacacacgcgcgcgcgctcccgcacacaaacacatacagacacacacaaggCAGCACGGAGACGCACGCGCGCGCGCCGGTCTGGGAGAGGGACGAGAGGCGTCCGAAACAGAGCGCGCGTGCGTTATAAACGGGCGGTGACAGTAGAAGAAGAGAGTTCCGaggtgtttctttcttttcctttcttttccttctctttctgagGAGTTCAGCGAGAAGAgtagagcagagcagagcgcACGGAGAAAGTGCTCGGAGAAAGCCAAAGCCAGTGCAGTAGGAACGGTGTCGGAGGGAGGACGCGCGCTCCGGTTCcagttctttatttctttgtctTTATTTCTGTTGGTTTGACTGTGCTGAGCGCGCTCAGGATGAACGCCCGAGAGGAGAACCTGCTGAAGTCGATCAGCGGGGACGCGCTGCTGGACCTCACGCAGCGCTACGGCCAGTCTGCGCTCGGCTTCGGGCCCCCTCGCAGTGGAGACAGCCCCGCGCGCTGCTTCCCTCTCGCGCcctccgccgccgccgccgcggCTGACTTCCTCTCCGCGCGCGCGGCCGCCAAAGCCGGCGAGAGCGGCGGCGAGCACACCAGCGACGACGACGACGGCTTCGAGCTGGACGCGCGCAAGAGGAGCCCCGGGTACGGCGACGGACACCTGGACGGCGGGCACGACGGCGACGACAAGCGCGCGGGAGGCGGCGCGCTCGGCAAAAAACCCAAGGAGCAGCGCTCCCTGCGCCTCAGCATCAACGCGCGCGAGCGGCGGCGCATGCACGACCTGAACGACGCGCTTGACGGCCTGCGCGCGGTCATACCCTACGCGCACAGCCCGTCCGTGCGCAAACTGTCCAAGATCGCCACGCTGCTGCTTGCCAAAAACTACATCCTGATGCAGGCGCAGGCGCTCGAGGAGATGCGCCGGCTCGTGGCCTACCTCAATCAGGGCCAGGCGGTCACGTCGTCGCCCGTGGCGCCGGCGCTCGCGCCCTTCGGACAGGCCGCCGTGTACCCGTTCACGGGCGCGGCGCTGGCCAGCTGCGCCGAGAAATGCGCGTACCCGGGCTCGCCCGCCAATCTCTTCAAACACTGCGGGGACAAGCCTTGACTGCGCGGCGTCGTGGAGCTGAACTTGTAAAAAGCGAGGCGGGGAGCGCGTGCGCCGTGTGCCGCGTGCCGCGCGCTTGAAGCGTCATATTTCTTGGgaaagaaaacaacaacaacaactacagCAATCACCACAACAACAATGGATTTTTAGTGAAACCCATAAATACTCCTTACAGCTTGTTTAAATCACTGCGATGTTTAATCCAGATTTACCagataaatgtaaaaagaaaaaaatcagtgtgAGATGGGATCAGGTATTCTGGGTCATTGGGCAACAAGGGAGCCCCTCAAAACTcgttaaaaaacttttttagtcCACATTTAGCTATTGGGCTGGAAGATATGGTCAAAATTGATATGGCAAAATAGTTCTTAATTTTACTGCGTGTCGTTTATTTCCAAAACAAAACTGTCAGTGACAGgtgctgtaaataatgtaaattaaattttcatgaATTGTATCACCTTATTAATACATCTATCGATTGGTATAAATTGATACTCAATTATTGTTCAACTCAAGTACAGGGTTTCATtctttgttctatttttttaacacttaatttaccttaaaacttaaaagaaCGAGTGACCAATGTCCCTAATGTTTGACCTGATGGCCCGCAGTACCTGAGTCCTGGTTGAAATCCTTTCAGTCCCGctgcttttcttctctctcctcaATCAATTAAGCTTCAGAACTGTCAACAGTGTGTGATATAACTGGTTGCATTGGAGTGCATGATCATTGGTCCTTCTAAAAGATGTAATGATATGTCAGAATTCAGAACTCTCTCCCCTTTCTAAGAAATTGAGTGTATTATTGGTAAACTAtgcaacatttaaaaactgaaactaaactggAAAACAAATTTGATTTctcttgtattattattattattattattattattattattattattattattattattattattactactactactacttcgcAATCAGCAGTCAGACATGAGTGGGAGAAACTCTAAAGAAACTCGAAAATCTCTCTTAACCCACCACTCCTCCCTTCACCTTCTTTTCTTAATGCTCTCTATGGACAAACTAAAAGGCTGTGTATAACACATTTCCAAGTTGTTGGTCTCTGAAGATGATTCTGGACATGTTCTTGCACAAATTCACTTGATTGTATTGTACAACTGTGAAGAAAAACTACTTGATAAAGCCTGAAGTGGCGAAGCGTTTGGTCTTGTTGCTACATGAGtttcatatattgtttatacgtctttataattaaaacatatcTATCAGCA

Function

GO: NA

KEGG:

id description
K09086 BHLHB4_5, BETA; class B basic helix-loop-helix protein 4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181269 lncRNA downstream 701 23450244 ~ 23450532 (-) True G134023
TU181251 lncRNA downstream 194041 23256098 ~ 23257192 (-) False G134015
TU181257 lncRNA downstream 194159 23256598 ~ 23257074 (-) True G134015
TU181217 lncRNA downstream 439575 23009793 ~ 23011658 (-) True G133982
TU181095 lncRNA downstream 601872 22848763 ~ 22849361 (-) True G133905
TU181278 lncRNA upstream 3775 23457458 ~ 23457695 (-) True G134026
TU181287 lncRNA upstream 22471 23476154 ~ 23476910 (-) True G134035
TU181372 lncRNA upstream 89893 23543576 ~ 23600365 (-) True G134087
TU181390 lncRNA upstream 190185 23643868 ~ 23690400 (-) True G134096
TU181409 lncRNA upstream 270288 23723971 ~ 23725419 (-) True G134110
XM_022676757.1 mRNA downstream 182975 23260640 ~ 23268258 (-) True LOC111194042
XM_007250004.3 mRNA downstream 448098 22938488 ~ 23003135 (-) True LOC103033828
XM_015605971.2 mRNA downstream 448634 22938488 ~ 23002599 (-) False LOC103033828
XM_022677354.1 mRNA downstream 517349 22917415 ~ 22933884 (-) False LOC103037932
XM_022677355.1 mRNA downstream 517445 22917415 ~ 22933788 (-) False LOC103037932
XM_007249971.3 mRNA upstream 178677 23632360 ~ 23642280 (-) True tfip11
XM_022677364.1 mRNA upstream 272410 23726093 ~ 23736836 (-) True pm20d1
XM_022677366.1 mRNA upstream 285278 23738961 ~ 23774264 (-) False LOC103022977
XM_022677368.1 mRNA upstream 285278 23738961 ~ 23759483 (-) False LOC103022977
XM_022677367.1 mRNA upstream 285278 23738961 ~ 23759073 (-) False LOC103022977
XR_002650924.1 other downstream 534849 22909821 ~ 22916384 (-) False LOC103034468
XR_002650923.1 other downstream 552975 22890646 ~ 22898258 (-) True LOC103038244
TU181092 other downstream 603334 22839406 ~ 22847899 (-) False LOC103040235
XR_453236.3 other downstream 4139189 19206943 ~ 19312044 (-) False LOC103040989
XR_002650908.1 other downstream 4466568 18983017 ~ 18984665 (-) True LOC111194102
TU181382 other upstream 170598 23624281 ~ 23631155 (-) True G134093
TU181672 other upstream 819061 24272744 ~ 24273069 (-) True G134312
TU181779 other upstream 977476 24431159 ~ 24433469 (-) True LOC111194023
TU181775 other upstream 1030294 24483977 ~ 24485728 (-) False trpc4ap
trnaf-gaa_3 other upstream 1351888 24805571 ~ 24805643 (-) True trnaf-gaa_3

Expression Profile