RNA id: XM_022682814.1


Basic Information

Item Value
RNA id XM_022682814.1
length 6148
RNA type mRNA
GC content 0.55
exon number 23
gene id magi1
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 32279802 ~ 32481485 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTAGTATAGTGGCGCTTGAGAggagcagcagcggcggcggaGAGACAAGATAAAAGAAAGAAGACGACACGCAGCGAGCCTGCCGACTGGAGTGATAGAAGagcagaggagaagaagaagcgaAGGAGGGGAAGCAGTGGAAAAGGAGAGAAGCGAGGACGGTGGAGGagtttgggattttttttgagattttctttctttctctttttttttggagctACGCGTCTGGATtaggagatgatgatgatgatgaggaggaggagtatAACCTAGTCAATGAGGTGGAATTAATTAGACTCAGCTGCTGCTAATGATGATGTTGATAAAGAAGAAGATCATGGCTTGATTTGGTTCTTGATGAAGGAGTTTTGGATGTTTCCAGAAAGCAGCTCAGAAACTTTCTACTTGTTGTGGATCTTCTAAAGTGCTTCTGCTGCTGGTGGTCGTGGTAAAGGTGGAGGTGTTTGTAGTTGGGACCCCCACCTGTTAGTGCCATGTCTAAGACCGGAGAGCGGAAGAACCACTGGAGCCGGCGGCTGCGGGAGAGCGCGGTGTCCCGGGACGCTCTGGCCGTGCCGCGGGGGCTGGCGGGCGGCGCTGAGCGGGGAGAGTTCGTGCACATCGGTGCTCTGGAACCGGGAGGCGTGCAGGAGGGCGAGCTCGTGCTGGAGGTGGAGGGGGTCAGCGTGTCCGGACTGCCGCTGTACGACGTGCTGAGCCTCGTGCAGAATTGCAGGGGGCCGGTCAGGATCAAAAGTGTACCCCAAGGAAATAAGCTAAACAAGGATCTAAAGCATTATCTGAGCCAGAGGTTCCAGAAGTCTTCAGATGACCACAAGCTCCAGCAGACCATACGGGATAACCTCTACCGCCATGCTGTGCCTTGTACGACCCGCCCACCTCGTGACGGAGAGGTGCCTGGTGTGGACTACAACTTCCTGTCTGTGGATGACTTCCTGAAACTCGAACAGAGCGGGACGCTTCTGGAAATTGGCTCTTATGAAGGTAACTACTATGGGACCCCGAAGCCCTCGCCGCAGCCCCCCGGTGTGAGGGTGGTCAGCAGTGATGTTCGTGCGGCCGGCCAGCCCGTCTCTCAGCAGCTCACGCCCCGCCGCAGCAAATCCTACAATGAGATGCAGAATGCTGGAATAGCAGAAacagaggatgaggaggagctTCCTGAAATGAACAGCAGCTTCacaggaGACTCGAGTGAACCAGACGAGCACCACTCGGTGCGCCCCTTCGCCCCGGCCCACCGGCTCAACAACGCCTTGGCGTCAACCACGGAGAGCacgcagaacacacacacacaccccagccACCCCACGGACGAGGACCCACTGGGCCCTCTGCCCGAGAACTGGGAGATGGCCTACACAGAGAGCGGAGAGGTCTACTTTATAGACCACAACACAAAGACCACGTCCTGGATAGACCCACGGTGCCTGGACAAGCCCCAGAAGCCCCTGGAGGAGTGCGATGATGATGAAGGGGTACATACCGAGGAACTGGACAATGACTTAGAGTTGCCCGCAGGCTGGGAAAAGATTGACGATCCAGTGTACGGGGTTTATTACGTCGAtcacaTTAACAGAAAGACTCAGTATGAAAACCCCATACTGGAGGCTAAGAGGAAGAAGCAGTTGGAGCAGTCTCAGCCCACTGAAGAATGGATAGAAGAGCACCCGTCAGGAGCGCCGCTAGCCAGCTATGCTAACCACCAGGAGACGTACCGAGAGCCGGGCTCCGCCGCGCCACAGATAGCAGCTAAACGAGGGAAGCCGTTCTTTACGCGAAACCCAGCCGAGCTCAAGGGCACCTTCATCAACACCAAACTGAAGAAGAGCCGCCGCGGTTTCGGCTTCACTGTGGTGGGCGGAGACGAGCCGGACGAGTTCCTGCAGATCAAAAGCCTGGTGCTGGATGGTCCGGCGGCCTTGGATGGCAAGATGGAGACGGGTGACGTCATCGTCAGCGTAAACGACACCTGCGTGCTTGGCTACACGCACGCCCAGGTGGTCAAGATCTTCCAGTCCATCCCCATCGGCTCCATGGTGGACCTGGAGCTGTGCCGGGGCTACCCCCTACCCTTTGATCCCGATGATCCCAACACCAGCCTGGTGACATCTGTGGCCATTGTGGACAAAGAGCCTATTATTGTCAATGGCCAGGAAAGCTACGACTCGCCTTCCAGCCATGGCAGCCAGTCAGCCGGGGCTGGAGGCAGCCTGAATGGCTCCAGTGAACCCCCACGACCCCGCAGTCCATCCGATGAGGTGGCCTCAAACAGCTCCCAGGAGCGTTACCCAAGCGACGTGGTGACACTGGCGTCATCCATTGCTACGCAGCCCGAGCTGATCACCGTACACATGGAGAAAGGCGACAAGGGCTTCGGCTTCACCATAGCGGACAGCCCGTCCGGTGGGGGCCAGAGAGTCAAGCAGATTGTGGATTACCCGCGATGCCGAGGGCTGCGGGAAGGCGACATTATTGTTGAGGTGAACAAGAGGAACGTGCAGAACCTTACCCACAACCAGGTGGTGGACATGCTGAGCAAGTGCCCCAAAGGAAGCGAGGTCACCATGCTGGTCCAAAGAGGGGTGGCTCCTGCAAAGAAGAGCCCTAAACTGCAGTTGGAGAGAAAGGACAGCCAGGGCAGCTCTCAGCACAGTGTGTCCAGCCACCGCAGTGCCCCCTCGGACTCCTCACCGCTCCACGCCACACAGGCCCTGCCCAACGAGACGGCGGCCCCACCCGCCCCGGTCCAGCCCCTGCCTGGCCTCCCTCAGCAGGACGTCCCGGCAGACGGCACCCTCGCCAAGAAACCAGACCCCTTCAAGATCTGGGCCCAGTCCAGGAGCATGTATGAAAGTAGGCTGCCAGATTACCAAGAGCAGGATATTTTCCTGTGGAGGAAAGACACAGGCTTCGGCTTCCGGATCCTTGGAGGGAACGAGGCAGGAGAACCGATTTACATCGGTCACATTGTAAAATACGGAGCAGCGGATGAAGATGGTCGACTGCGATCTGGAGATGAGCTCATTTGCGTGGACGGAACGGCCGTTGTGGGAAAGTCTCATCAGCTGGTGGTGCAGCTAATGCAACAAGCGGCCAAGCAGGGCCACGTTAACCTGACAGTCAGACGCAAGACCGGATACGGAGTAACTAAAGTGGACGGAGACGTACCTCCCTCGCCGGCCTCGTCTCACCACAGCAGCACACAGGCAGCGTCTCTGACAGAGGATAAGCGCACCCCGCAGGGCAGCCAGAACTCCCTCAACACGGTCAGCTCCGGCTCCGGCTCCACCAGCGGCATCGGCAGCggcggtggaggaggaggaggtggggggAACAGCAGCACGGTGGTGCCCAACACGCTCCAGCCGTACGACGTGGAGATCCGCCGCGGTGAAAACGAAGGCTTCGGCTTCGTCATTGTCTCGTCCGTGTCCAGACCCGACGCGGGAACCACTTTCGCTGGAAACACATGTGTGGCCATGCCTCATAAAATAGGGCGGATCATCGAGGGCAGCCCGGCGGACCGCTGCGGGAAGCTGAAGGTGGGCGACCGGATCCTGGCTGTGAACAGCTGCTCCATCACCAACAAATCCCACTCAGACATCGTCAACCTGATCAAGGAGGCGGGGAACACGGTGACTCTGCGCATCATTCCAGGAGACGagtCCTCTAACGCCTCACTGCTGACCAACGCTGAGAAAATcgccaccatcaccaccacacacacacctcaacagCAGGCTGCACCTGAGCCAAGAAACAACACCAAACCAAAACAGGAGTCTTTCGAGTTCAAAGCGCCTCAAgttcctcctccaccagcccCAACACAAGCCCAGAACCAGGACGAGTTCTACTCAGTGGATCTGGAGAGGGACAGTAAAGGCTTCGGCTTCAGTCTGCGAGGAGGACGCGAGTACAACATGGACCTGTACGTGCTGAGACTGGCTGAGGATGGCGCTGCAGTGCGAAGTGGCAAAATGAGGgTTGGGGACGAGATCCTGGAGATTAACGGCGAGAGCACCAAAGGCATGAAGCACGCCCGCGCCATAGAACTGATCAAAAACGGCGGCCGGACGGTGCACCTCGTCCTGAAGAGGGGCGACGGCTCCGTGCCTGAATATGACAACGACAACGACGGCACCGGCCCCGTCGTCGGGTCTCAAACTGTTTCGGAAGTGAACACGGCACCTCCTGACACTCAGTCCCATCCGCCATTGGATTCCAGCTCTCCACCAGAAATTCATAAACCATCCCGGAATGAGGAAAAGAGGGCACGAGAGACAGGTCAGCAGCATCACGGCCGCCGCTCCAACCATCACCATTCCAACCACAGACACCGCTCCCCAGACAGGAAAGGCAAGAGTAAGGGCAAACACCACAAGGAAAGCAGTGGTGGAGACCGGTCCAGAAAGAAGGGCGACAAAAGGTCTAGCAAAGATGACtcccaccatcaccaccaccaccaccagagGCACCGTTCACCAGAGAAAAGGCGTCGGGCCAGGAGTGCAGAGAATACCCTGGACAACCATTATGGACGTCGGCATGGCCGCTCACCAGAAAGACACCGCCACCGCAACTCGTCCCCCCATAGGCACCGCTCACCATATCGGTCAGGACAACGCCACCGTTCCCCTCAGCGGCATAGATCACCTTATCGTTCCCCACACCGCTCCAGATATCAGTCCCCCCGCAGGTCCTCCAACCCTTCCTCAAACAGACCTCGCAATGGCAAGCCCCAGCAAGATGAGGATGTGTTCCTTAGGGAGCCTCCACCTCCAGAGCCTCCATCGCGTCTGGAAAGTGTCTTGAGGGAGTCGCCTGCCCTGGACCGGCTAAACTGGGAGACTCCCCAGCCAAGACCAACGTATGAGCGGAACAATGTTTTGCCTCGACCATCTTACGGAGGGTTAGACCGTGATACCCTGCCCCGTCAGCCTTACAACCGGCTTGAACGTGATACCTTGCCCCGACTGTCTTACGACTACGACCGCTTGACCCTTGATGACGCCCTCCCTCAGCAGTCTCACAATCATTTGAACCATGACACTTTCCCCCGCAGATCGAATGGTTTTTCTTCCATCGAGCCGACTTACCGTGGAGACAGCCTGCTGAGAGGTCCTTACCAAGCCCAGAGCCTCCCCCGTGTCCGGACCCCCGACTCAGCCTTCGAAAGGTACAGCTCATTGTTGAGGGGTCGTTCTCCTGAGCGAAGGGGGAACAACTCAAACTCCAGACTGGAGCCTTCTCCAGGGGCGAGCCGTTACAGAACCAGGAGCCTTGGGCGAGAATTGTCCACAGACGAGGAAGACTCAGCAGaagaagatggagtgggaagttACTACAACAAGGTCAAGACTTCGGGCTTCAGCCGAGGCAAGGACACACTACCTGAGCCCAGGAGGAAGGCCTACAAAGACAACTCCAAAGATCTCAGCATCTGATACACCAACACGCTCCGGCAAAAACATGCCTTTCTCCAAACAAGTCCTCATCCGAGGACCATACCCGCGCAGACCCTTGGATTTACTACCCTATGGATTTGACATTCCGGTTTTCCTAGACAGAGATTCCTTAACAACTTGTAACAAACAGCAGAAGAATGGTTTTTATTGTACGTTCCAggaattgttgttttttttccctttctttctttctttttctacaaTTCCACAAACAGTTCTACATTCAATCAGAGATTGACAACTAATGTATAAAGCAAACGATTATGTGCCTAATAGTACCATTCTTGAtggtttttcttttataaagggCAGCCTTTTGAACTACTGTCTGACTAGAGTATCTTCGGTTTCAGAGAACGAACCCATGCAGCGAGCGCCTCTTTTCACCTGGTGCTCACAAAGTATGCTGTGCATGTCTTCACACTCTTcagtgtctttctttctctttctttctttcgtttatttctttctctccctcagtgccaatgttttttaaacatttgaccAGAGTATAGCACAAGTCTGCAttcatttgtatatttttgacagTTTGCAGTATGTGTACATTCAGAGGTGATCATTTTACGAGAATGAAgggaaaatgaagaaaaaaaactatgataatgtgaaaataaaactaatatatatacacattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263433 lncRNA downstream 196172 32081508 ~ 32083630 (-) True G194142
TU263444 lncRNA downstream 198431 32081015 ~ 32081371 (-) True G194153
TU263390 lncRNA downstream 377730 31901808 ~ 31902072 (-) True G194105
XR_002651582.1 lncRNA downstream 379812 31894502 ~ 31899990 (-) True LOC111195341
TU263578 lncRNA upstream 449 32481931 ~ 32482201 (-) True G194244
XM_022682812.1 mRNA downstream 83041 32099466 ~ 32196761 (-) True adamts9
XM_007256437.3 mRNA downstream 199090 31929726 ~ 32080712 (-) False prickle2
trnae-cuc_20 other downstream 1104924 31174807 ~ 31174878 (-) True trnae-cuc_20
TU263184 other downstream 1107333 31170339 ~ 31172469 (-) False LOC103037496
TU263040 other downstream 1448856 30809794 ~ 30830946 (-) True spcs1
TU263041 other downstream 1448856 30809794 ~ 30830946 (-) False spcs1
TU262902 other downstream 2099676 30165761 ~ 30180126 (-) True G193737

Expression Profile