RNA id: TU263444


Basic Information

Item Value
RNA id TU263444
length 357
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G194153
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 32081015 ~ 32081371 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatgttaaaattatattgttaatttaattgtaacatagaaaattacatttagaatttttcatatactgtatatccctTTCAGACCTTGCATCcgttacaatggacatcatgtacaatcctattttaaatgttttgttgcacataacactatttggGAGCTGTATAGATCATGAACTAGccaattaactttttaaagtttataaaccaatgaaacagtaacttggcccTGCCCACTGCAttggaaaaaaacagtagtactttaggcaaagtaacagcaattttttttaccaatgtaatgttatttagaacattttcattatttttttttattgtttcgggatggtttatgaaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263390 lncRNA downstream 178943 31901808 ~ 31902072 (-) True G194105
XR_002651582.1 lncRNA downstream 181025 31894502 ~ 31899990 (-) True LOC111195341
TU263404 lncRNA downstream 182631 31897591 ~ 31898384 (-) False LOC111195341
TU263317 lncRNA downstream 378763 31597364 ~ 31702252 (-) False G194046
TU263316 lncRNA downstream 378763 31698840 ~ 31702252 (-) True G194046
TU263433 lncRNA upstream 137 32081508 ~ 32083630 (-) True G194142
TU263567 lncRNA upstream 248955 32330326 ~ 32334659 (-) True G194234
TU263578 lncRNA upstream 400560 32481931 ~ 32482201 (-) True G194244
XM_007256437.3 mRNA downstream 303 31929726 ~ 32080712 (-) False prickle2
XM_022682810.1 mRNA downstream 45641 31929726 ~ 32035374 (-) False prickle2
XM_022682811.1 mRNA downstream 64406 31929726 ~ 32016609 (-) False prickle2
XM_007256438.3 mRNA downstream 111077 31929726 ~ 31969938 (-) True prickle2
XM_022682808.1 mRNA downstream 173210 31904235 ~ 31907805 (-) True LOC111195428
XM_022682812.1 mRNA upstream 18095 32099466 ~ 32196761 (-) True adamts9
XM_007256431.3 mRNA upstream 198431 32279802 ~ 32481483 (-) True magi1
XM_022682817.1 mRNA upstream 198431 32279802 ~ 32481482 (-) False magi1
XM_022682814.1 mRNA upstream 198431 32279802 ~ 32481482 (-) False magi1
XM_022682815.1 mRNA upstream 198431 32279802 ~ 32481482 (-) False magi1
trnae-cuc_20 other downstream 906137 31174807 ~ 31174878 (-) True trnae-cuc_20
TU263184 other downstream 908546 31170339 ~ 31172469 (-) False LOC103037496
TU263040 other downstream 1250069 30809794 ~ 30830946 (-) True spcs1
TU263041 other downstream 1250069 30809794 ~ 30830946 (-) False spcs1
TU262902 other downstream 1900889 30165761 ~ 30180126 (-) True G193737

Expression Profile