RNA id: TU388048


Basic Information

Item Value
RNA id TU388048
length 291
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G282507
representative True

Chromosome Information

Item Value
chromosome id NW_019172511.1
NCBI id APWO02002109.1
chromosome length 285184
location 202690 ~ 207490 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATCAGAGAGAGCAGCACACAGACAGGATTAGAAAACTGATGTCCTGCAAAAATCCCTGCAGCAACAATCACCCCAGACCCTCTGTGACCCACAGCCCACCTCACATACAGAGCCGTGGACCTGCTGGAGAACCACACACTGCAGCCAAatggagtggagagagagaagcagcagAATTGAGGGAGGAGAGAGGAACTGGAGATGCAGGAGAAAGACCAAAACCACCACCCAGGAGACGGCAGTGTGGAGTTAAATATCCAGCCTCCAGTACTGGTACAGTATTCAGTTTA

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0009056 catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387993 lncRNA upstream 21893 128251 ~ 180797 (+) False G282461
TU388003 lncRNA upstream 31200 170891 ~ 171490 (+) True G282469
TU387991 lncRNA upstream 64100 128251 ~ 138590 (+) True G282461
TU387995 lncRNA upstream 73917 57160 ~ 128773 (+) False G282461
TU388058 lncRNA downstream 45766 253256 ~ 253622 (+) True G282517
XM_007238880.3 mRNA upstream 78952 106723 ~ 123738 (+) True LOC103036536
XM_022664072.1 mRNA upstream 135618 63161 ~ 67072 (+) True LOC103035911

Expression Profile