RNA id: TU387995


Basic Information

Item Value
RNA id TU387995
length 325
lncRNA type read_through
GC content 0.42
exon number 2
gene id G282461
representative False

Chromosome Information

Item Value
chromosome id NW_019172511.1
NCBI id APWO02002109.1
chromosome length 285184
location 57160 ~ 180797 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattaGTCTGAAATGATGAGCTCGTCGCAGCCCCAGTCCTCGTAGCTCCCGTCGGGCAGATACCTGCGGATGATGATGGGGATCTTCCTGCTCCTGTAAcgcaataaaacacacatcttccttttttacaatatttgaaCCCAATTAAAGACAATACTATTTTTGTGAGGGATCACCCACCTACATATACAGCAATGAGTGTTATTACACTTTACAACAGATTAATACTATgccattaatattttttatcatggcGATGCAAGTGGTCACCACTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU388003 lncRNA downstream 42118 170891 ~ 171490 (+) True G282469
TU388048 lncRNA downstream 73917 202690 ~ 207490 (+) True G282507
TU388058 lncRNA downstream 124483 253256 ~ 253622 (+) True G282517

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU23960 True 215 lncRNA 0.37 1 NC_047596.1 1801642 ~ 1801856 (+)
bowfin (Amia calva) TU23960 True 913 lncRNA 0.32 1 CM030122.1 51295831 ~ 51296743 (-)
tiger barb (Puntius tetrazona) TU23960 False 267 lncRNA 0.48 2 NC_056701.1 1417894 ~ 1480682 (-)